From fe5e0fb2b874b825a594604ed93456cd7a15b212 Mon Sep 17 00:00:00 2001
From: Thiago Franco de Moraes <totonixsame@gmail.com>
Date: Tue, 11 Jun 2019 14:17:49 -0300
Subject: [PATCH] using imageio (imread and imsave from scipy deprecated)

---
 invesalius/data/measures.py        | 2 +-
 invesalius/data/styles.py          | 2 +-
 invesalius/data/viewer_volume.py   | 2 +-
 invesalius/reader/bitmap_reader.py | 4 ++--
 4 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/invesalius/data/measures.py b/invesalius/data/measures.py
index 9b19363..85393de 100644
--- a/invesalius/data/measures.py
+++ b/invesalius/data/measures.py
@@ -18,7 +18,7 @@ import invesalius.utils as utils
 
 from invesalius import math_utils
 from invesalius.gui.widgets.canvas_renderer import TextBox, CircleHandler, Ellipse, Polygon, CanvasHandlerBase
-from scipy.misc import imsave
+from imageio import imsave
 
 TYPE = {const.LINEAR: _(u"Linear"),
         const.ANGULAR: _(u"Angular"),
diff --git a/invesalius/data/styles.py b/invesalius/data/styles.py
index 5f302d4..040b403 100644
--- a/invesalius/data/styles.py
+++ b/invesalius/data/styles.py
@@ -40,7 +40,7 @@ import invesalius.session as ses
 import numpy as np
 
 from scipy import ndimage
-from scipy.misc import imsave
+from imageio import imsave
 from scipy.ndimage import watershed_ift, generate_binary_structure
 from skimage.morphology import watershed
 
diff --git a/invesalius/data/viewer_volume.py b/invesalius/data/viewer_volume.py
index 842ca80..00f2df6 100644
--- a/invesalius/data/viewer_volume.py
+++ b/invesalius/data/viewer_volume.py
@@ -32,7 +32,7 @@ from wx.lib.pubsub import pub as Publisher
 import random
 from scipy.spatial import distance
 
-from scipy.misc import imsave
+from imageio import imsave
 
 import invesalius.constants as const
 import invesalius.data.bases as bases
diff --git a/invesalius/reader/bitmap_reader.py b/invesalius/reader/bitmap_reader.py
index 0f532ad..b8d98f3 100644
--- a/invesalius/reader/bitmap_reader.py
+++ b/invesalius/reader/bitmap_reader.py
@@ -29,7 +29,7 @@ from wx.lib.pubsub import pub as Publisher
 from multiprocessing import cpu_count
 
 from vtk.util import numpy_support
-from scipy import misc
+from imageio import imread
 import numpy
 import imghdr
 
@@ -286,7 +286,7 @@ def VtkErrorPNGWriter(obj, f):
 
 def ScipyRead(filepath):
     try:
-        r = misc.imread(filepath, flatten=True)
+        r = imread(filepath, flatten=True)
         dt = r.dtype 
         if  dt == "float" or dt == "float16"\
                           or dt == "float32" or dt == "float64":   
--
libgit2 0.21.2