diff --git a/README.md b/README.md index ded4ab4..1080c27 100755 --- a/README.md +++ b/README.md @@ -16,68 +16,6 @@ InVesalius generates 3D medical imaging reconstructions based on a sequence of 2 ### Development -#### Linux 64 bits (tested on Ubuntu 16.04) - -1) Install the dependencies: `sudo apt-get install python-wxgtk3.0 python-numpy python-scipy python-pil python-matplotlib python-skimage python-nibabel python-serial python-psutil python-vtk6 python-vtkgdcm python-gdcm python-casmoothing cython` - -2) Enter on invesalius3 folder and execute: `python setup.py build_ext --inplace` - -#### Windows 64 bits (tested on Windows 7) - -1) **Python 2.7.8** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/python-2.7.8.amd64.msi - -* Create a system variable named `%PYTHONPATH%` with values: `C:\Python27;C:\Python27\Lib;C:\Python27\Lib\site-packages;C:\Python27\Scripts;` -* Insert into `Path` varibale the value `%PYTHONPATH%` - -2) **wxPython 3.0.2** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/wxPython3.0-win64-3.0.2.0-py27.exe - -3) **PIP** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/get-pip.py -* Download the script and execute `python get-pip.py` - -4) **Numpy 1.11.0** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/numpy-1.11.0+mkl-cp27-cp27m-win_amd64.whl -* Download and execute `pip install numpy-1.11.0+mkl-cp27-cp27m-win_amd64.whl` - -5) **Scipy 0.17.1** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/scipy-0.17.1-cp27-cp27m-win_amd64.whl -* Download and execute `pip install scipy-0.17.1-cp27-cp27m-win_amd64.whl` - -6) **Pillow (new Python Image Library)** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/Pillow-3.2.0-cp27-cp27m-win_amd64.whl -* Download and execute `pip install Pillow-3.2.0-cp27-cp27m-win_amd64.whl` - -7) **Matplotlib 1.5.1** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/matplotlib-1.5.1-cp27-none-win_amd64.whl -* Download and execute `pip install matplotlib-1.5.1-cp27-none-win_amd64.whl` - -8) **Scikit Image 0.12.3** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/scikit_image-0.12.3-cp27-cp27m-win_amd64.whl -* Download and execute `pip install scikit_image-0.12.3-cp27-cp27m-win_amd64.whl` - -9) **Nibabel 2.0.2** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/nibabel-2.0.2-py2.py3-none-any.whl -* Download and execute `pip install nibabel-2.0.2-py2.py3-none-any.whl` - -10) **PySerial 3.0.1** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/pyserial-3.0.1-py2.py3-none-any.whl -* Download and execute `pip install pyserial-3.0.1-py2.py3-none-any.whl` - -11) **PSUtil 4.2.0** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/psutil-4.2.0-cp27-cp27m-win_amd64.whl -* Download and execute `pip install psutil-4.2.0-cp27-cp27m-win_amd64.whl` - -12) **VTK 6.3.0** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/vtk.zip -* Download and unzip on `C:\Python27\Lib\site-packages` and add on `%PYTHONPATH%` variable the value `C:\Python27\Lib\site-packages\vtk\vtk;` - -13) **GDCM (trunk)** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/gdcm.zip -* Download and unzip on `C:\Python27\Lib\site-packages` and add on `%PYTHONPATH%` variable the value `C:\Python27\Lib\site-packages\gdcm;` - -14) **CA Smoothing** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/python_ca_smoothing.zip -* Download and unzip the two files on `C:\Python27\Lib\site-packages` - -15) **Visual C++ 2015 Runtime** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/vcredist_x64.exe -* Download and install - -16) **Cython** -* Execute `pip install cython` - -17) **Compiled InVesalius parts** - -* Option 1: Install [Microsoft Visual Studio Community 2015](https://www.visualstudio.com/pt-br/downloads/download-visual-studio-vs.aspx) and execute `python setup.py build_ext --inplace` on invesalius3 folder. - -* Option 2: Download pre-compiled parts and unzip on `invesalius3/invesalius/data` - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/invesalius-compiled_parts.zip - - -Special thank's to Christoph Gohlke, Laboratory for Fluorescence Dynamics, University of California, Irvine for providing the pre-compiled of various [python packages for Windows 64 bits](http://www.lfd.uci.edu/~gohlke/pythonlibs/) +* [Running InVesalius 3 in Linux](https://github.com/invesalius/invesalius3/wiki/Running-InVesalius-3-in-Linux) +* [Running InVesalius 3 in Mac](https://github.com/invesalius/invesalius3/wiki/Running-InVesalius-3-in-Mac) +* [Running InVesalius 3 in Windows](https://github.com/invesalius/invesalius3/wiki/Running-InVesalius-3-in-Windows) -- libgit2 0.21.2