Software Público Brasileiro

* working

* Highlight target and added target icon

* The markers angles are saved now. Target ID created.

-Load markers works for data with angles and/or without angles data
-Load markers recognizes target ID.

* bug fix

* Task panel and dialog to configure coil tracking
- ADD: task panel for coil registration
- ADD: dialog with vtk window and coil obj

* Fixed markers angles bug
-Sometimes the sendmessage "Navigation Status" was arriving before the while thread is over.

* testing...

* Improve coil tracking and tracker communication
- ADD: dialog for coil registration
- ADD: panel for coil registration
- ENH: coordinate recording with Polhemus

* Improve Polhemus communication and trackers management
- ENH: Polhemus wrapper communication, connect and disconnect
- ENH: Choice of trackers
- FIX: Polhemus Fastrak navigation

* show/hide coil tracker
-tracker angles is updating coil tracker

* Just one target can be set

* Uncheck camera volume box when "set target" is selected

* Create target and track distance and orientation

-coil turn to green when orientation is less than the threshold (accept)

* Camera position and focus is based on target

- set transparency on target
- reposition 'distance txt'

* Improve coordinates handling and coil tracking interface
- ENH: coordinates managed with one array, each row is one tracker sensor
- FIX: several minor bugs and wx import masking
- ENH: better dialog for coil tracking
- ADD: coil tracking test thread simulating navigation
- ENH: dynamic reference must be applied outside coordinates module

* Disabled the set target menu when navigation is off

- Avoided bug if user set ID as TARGET

* Temporary coil tracking pipeline
- ENH: improved dialog UI for coil registration
- ENH: multiple coregistration methods depending on coil registration
- ADD: coil tracking to volume viewer

* Minor adjustments in UI and coil tracking

* Zoom camera with target distance

-set arrow upper limit

* Fixed distance text

* Fixed camera position

* Add translate of coil object in vtk matrix

* Set colors

* Text improvements

* Changes in coil registration
- ENH: improve variables and general bugs
- FIX: math for coil registration almost working

* Created coil tracker constants

* Coil coord threshold constants

* Fixed object orientation in dynamic and static navigation
- FIX: coil registration in static mode (sensor 1,2 working)
- ENH: object update in volume viewer improved
- ENH: coregistration adpated to object tracking
- TODO: allow coil registration with sensor 3

* Fixed object tracking and registration bugs
- ENH: UI for object tracking
- ADD: load and save object registration files
- Obs: orientation tracking works for static coil mode (1 ref)
- Obs: orientation tracking works for static and dynamic navigation

* Wrappers are set as metric

* Bug fix
-Avoided bug when no data is selected and the user tries to remove marker

* Removed unused icon

* Code refactoring for object registration
- ADD: button for object registration save in navigation panel
- ADD: dynamic object registration (3 sensors)
- ENH: object registration information saved
- Code cleaned and removed axes for visualization

* Group coil tracking interface with navigation refactoring
- Merge of vhosouza and rmatsuda branchs to track coil
- Navigation still not fully working
- Coil registration not working properly

* Enhance dynamic reference transformation equation

* Created ctrls angles and dist threshold

* Created option to record coordinates and angles along time

* Improve object orientation tracking in dynamic reference

* improvements

* Trials to fix track object orientation

* Fixed coils position

* Created message box for objects registration

* Coregistration changed to matrix multiplication
- Using transformations module
- Only Dynamic Reference without object is working

* Attempts to coil tracking improved

* Changes in object tracking algorithm
- Still not working

* Coregistration improvements

* New changes to track object orientation

* Object tracking with commented code working, axis rotation alligned

* Dynamic object registration working for rotation
- ENH: object registration base creation
- ENH: object registration algorithm for rotation
- TODO: translation and offset not working properly

* Dynamic object registration trying to fix object offset

* Dynamic object registration working
- FIX: offset of sensor to object center

* Code refactoring for navigation with object registration
- FIX: Close project not restarting navigation panel
- ENH: Navigation coregistration algorithms
- ENH: Object data handling in viewer volume
- ENH: Panels and controls in navigation task

* More closing project fix for navigation mode

* Enable object new, load and save buttons
- FIX: minor fix in navigation interface

* Improvement in object tracking panel
- FIX: restart variables while closing project
- ENH: object show and track checkboxes

* Update to correct Neurosoft Fig 8 TMS coil model

* Coil tracking improvements

-TODO: remove dummy coil when set target mode is off
-TODO: Enable target mode button only when target and object are set

* Enable target mode button only when target and object are set

-TODO: remove dummy coil when set target mode is off

* Disable target mode when track obj is off

* Fixed arrow directions and created text for obj registration

* Crucial fix to the object registration algorithm
- object was registered to the head m_head, now registered to the object basis in image space
- minor changes in variables related to navigation

* Camera orientation and distance text update

-Dist text is showing with dummy coil actor
-Camera is always orienting parallel to dummy coil actor
-TODO: fix - when target mode is off the dist text and the dummy coil keeps green
-TODO: fix - if the obj are not loaded the load markers (target) doesnt work properly

* Fixed initial current_coord

* Fixed fiducials creation markers and ENH: just showing coil when nav is on

* Target is reset when target mode is off

* Remove messages when project is closed

* Disable ref mode for obj registration

* Improvements on camera position

* Set vol. camera default true

- TODO: when nav is off, vol is reset to front position

* Camera is not reset when nav is off, but when target_mode is off

* Nav off do not set target mode off anymore