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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
<html><head><title>R: Teratogenesis rtPCR data</title>
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<table width="100%" summary="page for rtPCR {gplots}"><tr><td>rtPCR {gplots}</td><td align="right">R Documentation</td></tr></table>
<h2>Teratogenesis rtPCR data</h2>
<h3>Description</h3>
<p>
rtPCR data for experiments investigating a variety of markers for
characterizing teratogenicity.
</p>
<h3>Usage</h3>
<pre>data(rtPCR)</pre>
<h3>Format</h3>
<p>
A data frame with 1672 observations on the following 21 variables.
<dl>
<dt>PlateID</dt><dd>a factor with levels <code>A0027002</code> through
<code>A0054019</code></dd>
<dt>Test.Substance</dt><dd>a factor with levels <code>Compound A</code> through
<code>Compound H</code></dd>
<dt>Teratogenicity.in.vivo</dt><dd>a factor with levels <code>Non</code>
<code>Strong</code> <code>Weak / Moderate</code></dd>
<dt>Sample</dt><dd>a factor with levels <code>Sample 1</code> - <code>Sample 152</code></dd>
<dt>Rep..</dt><dd>a factor with levels <code>Rep 1</code> - <code>Rep 21</code></dd>
<dt>Label</dt><dd>a factor with levels <code>Ctrl</code>, <code>Neg. Ctrl</code>
<code>P1</code> - <code>P9</code>, <code>No Vehicle Ctrl</code>, and <code>Pos. Ctrl</code></dd>
<dt>Conc..ug.ml.</dt><dd>a numeric vector</dd>
<dt>Detector</dt><dd>a factor with levels <code>ProbeType 1</code> -
<code>ProbeType 17</code></dd>
<dt>Avg.delta.Ct</dt><dd>a numeric vector</dd>
<dt>delta.Ct.SD</dt><dd>a numeric vector</dd>
<dt>delta.delta.Ct</dt><dd>a numeric vector</dd>
<dt>RQ</dt><dd>a numeric vector</dd>
<dt>X..RQ</dt><dd>a numeric vector</dd>
<dt>X100..Custom..</dt><dd>a numeric vector</dd>
<dt>X100...Custom..</dt><dd>a numeric vector</dd>
<dt>Custom..</dt><dd>a numeric vector</dd>
<dt>Custom...1</dt><dd>a numeric vector</dd>
<dt>RQ.Min</dt><dd>a numeric vector</dd>
<dt>RQ.Max</dt><dd>a numeric vector</dd>
<dt>Threshold</dt><dd>a numeric vector</dd>
</dl>
<h3>Details</h3>
<p>
TBA
</p>
<h3>Source</h3>
<p>
Anonymized data.
</p>
<h3>Examples</h3>
<pre>
data(rtPCR)
# same scale
overplot( RQ ~ Conc..ug.ml. | Test.Substance,
data=rtPCR,
subset=Detector=="ProbeType 7" & Conc..ug.ml. > 0,
same.scale=TRUE,
log="xy",
f=3/4,
main="Detector=ProbeType 7",
xlab="Concentration (ug/ml)",
ylab="Relative Gene Quantification"
)
# different scales, but force lower limit to 0.01
overplot( RQ ~ Conc..ug.ml. | Test.Substance,
data=rtPCR,
subset=Detector=="ProbeType 7" & Conc..ug.ml. > 0,
log="xy",
f=3/4,
main="Detector=ProbeType 7",
xlab="Concentration (ug/ml)",
ylab="Relative Gene Quantification",
min.y=0.01
)
</pre>
<hr><div align="center">[Package <em>gplots</em> version 2.3.2 <a href="00Index.html">Index]</a></div>
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