import_panel.py
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#--------------------------------------------------------------------------
# Software: InVesalius - Software de Reconstrucao 3D de Imagens Medicas
# Copyright: (C) 2001 Centro de Pesquisas Renato Archer
# Homepage: http://www.softwarepublico.gov.br
# Contact: invesalius@cti.gov.br
# License: GNU - GPL 2 (LICENSE.txt/LICENCA.txt)
#--------------------------------------------------------------------------
# Este programa e software livre; voce pode redistribui-lo e/ou
# modifica-lo sob os termos da Licenca Publica Geral GNU, conforme
# publicada pela Free Software Foundation; de acordo com a versao 2
# da Licenca.
#
# Este programa eh distribuido na expectativa de ser util, mas SEM
# QUALQUER GARANTIA; sem mesmo a garantia implicita de
# COMERCIALIZACAO ou de ADEQUACAO A QUALQUER PROPOSITO EM
# PARTICULAR. Consulte a Licenca Publica Geral GNU para obter mais
# detalhes.
#--------------------------------------------------------------------------
import wx
import wx.gizmos as gizmos
from pubsub import pub as Publisher
import wx.lib.splitter as spl
import invesalius.constants as const
import invesalius.gui.dialogs as dlg
import invesalius.gui.dicom_preview_panel as dpp
import invesalius.reader.dicom_grouper as dcm
myEVT_SELECT_SERIE = wx.NewEventType()
EVT_SELECT_SERIE = wx.PyEventBinder(myEVT_SELECT_SERIE, 1)
myEVT_SELECT_SLICE = wx.NewEventType()
EVT_SELECT_SLICE = wx.PyEventBinder(myEVT_SELECT_SLICE, 1)
myEVT_SELECT_PATIENT = wx.NewEventType()
EVT_SELECT_PATIENT = wx.PyEventBinder(myEVT_SELECT_PATIENT, 1)
myEVT_SELECT_SERIE_TEXT = wx.NewEventType()
EVT_SELECT_SERIE_TEXT = wx.PyEventBinder(myEVT_SELECT_SERIE_TEXT, 1)
class SelectEvent(wx.PyCommandEvent):
def __init__(self , evtType, id):
super(SelectEvent, self).__init__(evtType, id)
def GetSelectID(self):
return self.SelectedID
def SetSelectedID(self, id):
self.SelectedID = id
def GetItemData(self):
return self.data
def SetItemData(self, data):
self.data = data
class Panel(wx.Panel):
def __init__(self, parent):
wx.Panel.__init__(self, parent, pos=wx.Point(5, 5))#,
#size=wx.Size(280, 656))
sizer = wx.BoxSizer(wx.VERTICAL)
sizer.Add(InnerPanel(self), 1, wx.EXPAND|wx.GROW|wx.ALL, 5)
self.SetSizer(sizer)
sizer.Fit(self)
self.Layout()
self.Update()
self.SetAutoLayout(1)
# Inner fold panel
class InnerPanel(wx.Panel):
def __init__(self, parent):
wx.Panel.__init__(self, parent, pos=wx.Point(5, 5))#,
#size=wx.Size(680, 656))
self.patients = []
self.first_image_selection = None
self.last_image_selection = None
self._init_ui()
self._bind_events()
self._bind_pubsubevt()
def _init_ui(self):
splitter = spl.MultiSplitterWindow(self, style=wx.SP_LIVE_UPDATE)
splitter.SetOrientation(wx.VERTICAL)
self.splitter = splitter
panel = wx.Panel(self)
self.btn_cancel = wx.Button(panel, wx.ID_CANCEL)
self.btn_ok = wx.Button(panel, wx.ID_OK, _("Import"))
btnsizer = wx.StdDialogButtonSizer()
btnsizer.AddButton(self.btn_ok)
btnsizer.AddButton(self.btn_cancel)
btnsizer.Realize()
self.combo_interval = wx.ComboBox(panel, -1, "", choices=const.IMPORT_INTERVAL,
style=wx.CB_DROPDOWN|wx.CB_READONLY)
self.combo_interval.SetSelection(0)
inner_sizer = wx.BoxSizer(wx.HORIZONTAL)
inner_sizer.Add(btnsizer, 0, wx.LEFT|wx.TOP, 5)
inner_sizer.Add(self.combo_interval, 0, wx.ALIGN_CENTER_VERTICAL|wx.LEFT|wx.RIGHT|wx.TOP, 5)
panel.SetSizer(inner_sizer)
inner_sizer.Fit(panel)
sizer = wx.BoxSizer(wx.VERTICAL)
sizer.Add(splitter, 20, wx.EXPAND)
sizer.Add(panel, 0, wx.EXPAND|wx.LEFT, 90)
self.text_panel = TextPanel(splitter)
splitter.AppendWindow(self.text_panel, 250)
self.image_panel = ImagePanel(splitter)
splitter.AppendWindow(self.image_panel, 250)
self.SetSizer(sizer)
sizer.Fit(self)
self.Layout()
self.Update()
self.SetAutoLayout(1)
def _bind_pubsubevt(self):
Publisher.subscribe(self.ShowDicomPreview, "Load import panel")
Publisher.subscribe(self.GetSelectedImages ,"Selected Import Images")
def GetSelectedImages(self, selection):
self.first_image_selection = selection[0]
self.last_image_selection = selection[1]
def _bind_events(self):
self.Bind(EVT_SELECT_SERIE, self.OnSelectSerie)
self.Bind(EVT_SELECT_SLICE, self.OnSelectSlice)
self.Bind(EVT_SELECT_PATIENT, self.OnSelectPatient)
self.btn_ok.Bind(wx.EVT_BUTTON, self.OnClickOk)
self.btn_cancel.Bind(wx.EVT_BUTTON, self.OnClickCancel)
self.text_panel.Bind(EVT_SELECT_SERIE_TEXT, self.OnDblClickTextPanel)
def ShowDicomPreview(self, dicom_groups):
self.patients.extend(dicom_groups)
self.text_panel.Populate(dicom_groups)
def OnSelectSerie(self, evt):
patient_id, serie_number = evt.GetSelectID()
self.text_panel.SelectSerie(evt.GetSelectID())
for patient in self.patients:
if patient_id == patient.GetDicomSample().patient.id:
for group in patient.GetGroups():
if serie_number == group.GetDicomSample().acquisition.serie_number:
self.image_panel.SetSerie(group)
def OnSelectSlice(self, evt):
pass
def OnSelectPatient(self, evt):
pass
def OnDblClickTextPanel(self, evt):
group = evt.GetItemData()
self.LoadDicom(group)
def OnClickOk(self, evt):
group = self.text_panel.GetSelection()
if group:
self.LoadDicom(group)
def OnClickCancel(self, evt):
Publisher.sendMessage("Cancel DICOM load")
def LoadDicom(self, group):
interval = self.combo_interval.GetSelection()
if not isinstance(group, dcm.DicomGroup):
group = max(group.GetGroups(), key=lambda g: g.nslices)
slice_amont = group.nslices
if (self.first_image_selection != None) and (self.first_image_selection != self.last_image_selection):
slice_amont = (self.last_image_selection) - self.first_image_selection
slice_amont += 1
if slice_amont == 0:
slice_amont = group.nslices
nslices_result = slice_amont / (interval + 1)
Publisher.sendMessage('Open DICOM group', group=group,
interval=interval,
file_range=(self.first_image_selection, self.last_image_selection))
class TextPanel(wx.Panel):
def __init__(self, parent):
wx.Panel.__init__(self, parent, -1)
self._selected_by_user = True
self.idserie_treeitem = {}
self.treeitem_idpatient = {}
self.__init_gui()
self.__bind_events_wx()
self.__bind_pubsub_evt()
def __bind_pubsub_evt(self):
Publisher.subscribe(self.SelectSeries, 'Select series in import panel')
def __bind_events_wx(self):
self.Bind(wx.EVT_SIZE, self.OnSize)
def __init_gui(self):
tree = gizmos.TreeListCtrl(self, -1, style =
wx.TR_DEFAULT_STYLE
| wx.TR_HIDE_ROOT
| wx.TR_ROW_LINES
# | wx.TR_COLUMN_LINES
| wx.TR_FULL_ROW_HIGHLIGHT
| wx.TR_SINGLE
)
tree.AddColumn(_("Patient name"))
tree.AddColumn(_("Patient ID"))
tree.AddColumn(_("Age"))
tree.AddColumn(_("Gender"))
tree.AddColumn(_("Study description"))
tree.AddColumn(_("Modality"))
tree.AddColumn(_("Date acquired"))
tree.AddColumn(_("# Images"))
tree.AddColumn(_("Institution"))
tree.AddColumn(_("Date of birth"))
tree.AddColumn(_("Accession Number"))
tree.AddColumn(_("Referring physician"))
tree.SetMainColumn(0) # the one with the tree in it...
tree.SetColumnWidth(0, 280) # Patient name
tree.SetColumnWidth(1, 110) # Patient ID
tree.SetColumnWidth(2, 40) # Age
tree.SetColumnWidth(3, 60) # Gender
tree.SetColumnWidth(4, 160) # Study description
tree.SetColumnWidth(5, 70) # Modality
tree.SetColumnWidth(6, 200) # Date acquired
tree.SetColumnWidth(7, 70) # Number Images
tree.SetColumnWidth(8, 130) # Institution
tree.SetColumnWidth(9, 100) # Date of birth
tree.SetColumnWidth(10, 140) # Accession Number
tree.SetColumnWidth(11, 160) # Referring physician
self.root = tree.AddRoot(_("InVesalius Database"))
self.tree = tree
def SelectSeries(self, group_index):
pass
def Populate(self, patient_list):
tree = self.tree
first = 0
for patient in patient_list:
if not isinstance(patient, dcm.PatientGroup):
return None
ngroups = patient.ngroups
dicom = patient.GetDicomSample()
title = dicom.patient.name + " (%d series)"%(ngroups)
date_time = "%s %s"%(dicom.acquisition.date,
dicom.acquisition.time)
parent = tree.AppendItem(self.root, title)
if not first:
parent_select = parent
first += 1
tree.SetItemPyData(parent, patient)
tree.SetItemText(parent, "%s" % dicom.patient.id, 1)
tree.SetItemText(parent, "%s" % dicom.patient.age, 2)
tree.SetItemText(parent, "%s" % dicom.patient.gender, 3)
tree.SetItemText(parent, "%s" % dicom.acquisition.study_description, 4)
tree.SetItemText(parent, "%s" % dicom.acquisition.modality, 5)
tree.SetItemText(parent, "%s" % date_time, 6)
tree.SetItemText(parent, "%s" % patient.nslices, 7)
tree.SetItemText(parent, "%s" % dicom.acquisition.institution, 8)
tree.SetItemText(parent, "%s" % dicom.patient.birthdate, 9)
tree.SetItemText(parent, "%s" % dicom.acquisition.accession_number, 10)
tree.SetItemText(parent, "%s" % dicom.patient.physician, 11)
group_list = patient.GetGroups()
for n, group in enumerate(group_list):
dicom = group.GetDicomSample()
child = tree.AppendItem(parent, group.title)
tree.SetItemPyData(child, group)
tree.SetItemText(child, "%s" % group.title, 0)
tree.SetItemText(child, "%s" % dicom.acquisition.protocol_name, 4)
tree.SetItemText(child, "%s" % dicom.acquisition.modality, 5)
tree.SetItemText(child, "%s" % date_time, 6)
tree.SetItemText(child, "%s" % group.nslices, 7)
self.idserie_treeitem[(dicom.patient.id,
dicom.acquisition.serie_number)] = child
tree.Expand(self.root)
tree.SelectItem(parent_select)
tree.Bind(wx.EVT_TREE_ITEM_ACTIVATED, self.OnActivate)
tree.Bind(wx.EVT_TREE_SEL_CHANGED, self.OnSelChanged)
def OnSelChanged(self, evt):
item = self.tree.GetSelection()
if self._selected_by_user:
group = self.tree.GetItemPyData(item)
if isinstance(group, dcm.DicomGroup):
Publisher.sendMessage('Load group into import panel',
group=group)
elif isinstance(group, dcm.PatientGroup):
id = group.GetDicomSample().patient.id
my_evt = SelectEvent(myEVT_SELECT_PATIENT, self.GetId())
my_evt.SetSelectedID(id)
self.GetEventHandler().ProcessEvent(my_evt)
Publisher.sendMessage('Load patient into import panel',
patient=group)
else:
parent_id = self.tree.GetItemParent(item)
self.tree.Expand(parent_id)
evt.Skip()
def OnActivate(self, evt):
item = evt.GetItem()
group = self.tree.GetItemPyData(item)
my_evt = SelectEvent(myEVT_SELECT_SERIE_TEXT, self.GetId())
my_evt.SetItemData(group)
self.GetEventHandler().ProcessEvent(my_evt)
def OnSize(self, evt):
self.tree.SetSize(self.GetSize())
def SelectSerie(self, serie):
self._selected_by_user = False
item = self.idserie_treeitem[serie]
self.tree.SelectItem(item)
self._selected_by_user = True
def GetSelection(self):
"""Get selected item"""
item = self.tree.GetSelection()
group = self.tree.GetItemPyData(item)
return group
class ImagePanel(wx.Panel):
def __init__(self, parent):
wx.Panel.__init__(self, parent, -1)
self._init_ui()
self._bind_events()
def _init_ui(self):
splitter = spl.MultiSplitterWindow(self, style=wx.SP_LIVE_UPDATE)
splitter.SetOrientation(wx.HORIZONTAL)
self.splitter = splitter
# TODO Rever isso
# splitter.ContainingSizer = wx.BoxSizer(wx.HORIZONTAL)
sizer = wx.BoxSizer(wx.HORIZONTAL)
sizer.Add(splitter, 1, wx.EXPAND)
self.SetSizer(sizer)
self.text_panel = SeriesPanel(splitter)
splitter.AppendWindow(self.text_panel, 600)
self.image_panel = SlicePanel(splitter)
splitter.AppendWindow(self.image_panel, 250)
self.SetSizer(sizer)
sizer.Fit(self)
self.Layout()
self.Update()
self.SetAutoLayout(1)
def _bind_events(self):
self.text_panel.Bind(EVT_SELECT_SERIE, self.OnSelectSerie)
self.text_panel.Bind(EVT_SELECT_SLICE, self.OnSelectSlice)
def OnSelectSerie(self, evt):
evt.Skip()
def OnSelectSlice(self, evt):
self.image_panel.dicom_preview.ShowSlice(evt.GetSelectID())
evt.Skip()
def SetSerie(self, serie):
self.image_panel.dicom_preview.SetDicomGroup(serie)
class SeriesPanel(wx.Panel):
def __init__(self, parent):
wx.Panel.__init__(self, parent, -1)
#self.SetBackgroundColour((0,0,0))
self.serie_preview = dpp.DicomPreviewSeries(self)
self.dicom_preview = dpp.DicomPreviewSlice(self)
self.dicom_preview.Show(0)
self.sizer = wx.BoxSizer(wx.HORIZONTAL)
self.sizer.Add(self.serie_preview, 1, wx.EXPAND | wx.ALL, 5)
self.sizer.Add(self.dicom_preview, 1, wx.EXPAND | wx.ALL, 5)
self.sizer.Fit(self)
self.SetSizer(self.sizer)
self.Layout()
self.Update()
self.SetAutoLayout(1)
self.__bind_evt()
self._bind_gui_evt()
def __bind_evt(self):
Publisher.subscribe(self.ShowDicomSeries, 'Load dicom preview')
Publisher.subscribe(self.SetDicomSeries, 'Load group into import panel')
Publisher.subscribe(self.SetPatientSeries, 'Load patient into import panel')
def _bind_gui_evt(self):
self.serie_preview.Bind(dpp.EVT_CLICK_SERIE, self.OnSelectSerie)
self.dicom_preview.Bind(dpp.EVT_CLICK_SLICE, self.OnSelectSlice)
def SetDicomSeries(self, group):
self.dicom_preview.SetDicomGroup(group)
self.dicom_preview.Show(1)
self.serie_preview.Show(0)
self.sizer.Layout()
self.Update()
def GetSelectedImagesRange(self):
return [self.dicom_preview.first_selected, self.dicom_preview_last_selection]
def SetPatientSeries(self, patient):
self.dicom_preview.Show(0)
self.serie_preview.Show(1)
self.serie_preview.SetPatientGroups(patient)
self.dicom_preview.SetPatientGroups(patient)
self.Update()
def OnSelectSerie(self, evt):
serie = evt.GetItemData()
data = evt.GetItemData()
my_evt = SelectEvent(myEVT_SELECT_SERIE, self.GetId())
my_evt.SetSelectedID(evt.GetSelectID())
my_evt.SetItemData(evt.GetItemData())
self.GetEventHandler().ProcessEvent(my_evt)
#self.dicom_preview.SetDicomGroup(serie)
#self.dicom_preview.Show(1)
#self.serie_preview.Show(0)
self.sizer.Layout()
#self.Show()
self.Update()
def OnSelectSlice(self, evt):
my_evt = SelectEvent(myEVT_SELECT_SLICE, self.GetId())
my_evt.SetSelectedID(evt.GetSelectID())
my_evt.SetItemData(evt.GetItemData())
self.GetEventHandler().ProcessEvent(my_evt)
def ShowDicomSeries(self, patient):
if isinstance(patient, dcm.PatientGroup):
self.serie_preview.SetPatientGroups(patient)
self.dicom_preview.SetPatientGroups(patient)
class SlicePanel(wx.Panel):
def __init__(self, parent):
wx.Panel.__init__(self, parent, -1)
self.__init_gui()
self.__bind_evt()
def __bind_evt(self):
Publisher.subscribe(self.ShowDicomSeries, 'Load dicom preview')
Publisher.subscribe(self.SetDicomSeries, 'Load group into import panel')
Publisher.subscribe(self.SetPatientSeries, 'Load patient into import panel')
def __init_gui(self):
self.SetBackgroundColour((255,255,255))
self.dicom_preview = dpp.SingleImagePreview(self)
sizer = wx.BoxSizer(wx.VERTICAL)
sizer.Add(self.dicom_preview, 1, wx.GROW|wx.EXPAND)
sizer.Fit(self)
self.SetSizer(sizer)
self.Layout()
self.Update()
self.SetAutoLayout(1)
self.sizer = sizer
def SetPatientSeries(self, patient):
group = patient.GetGroups()[0]
self.dicom_preview.SetDicomGroup(group)
self.sizer.Layout()
self.Update()
def SetDicomSeries(self, group):
self.dicom_preview.SetDicomGroup(group)
self.sizer.Layout()
self.Update()
def ShowDicomSeries(self, patient):
group = patient.GetGroups()[0]
self.dicom_preview.SetDicomGroup(group)
self.sizer.Layout()
self.Update()