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Commit 3b3ba257489181edf97470e00159b7b7c3568e61

Authored by tfmoraes
1 parent 7b2c767a
Exists in master and in 6 other branches beta3, beta4, inv3.0.1, invesalius-libift, usp-navegador, wxgtk3_b5

ADD: Filling holes in the surface pipeline

Showing 2 changed files with 13 additions and 2 deletions   Show diff stats
invesalius/data/surface.py
  Diff comments   View file @3b3ba25
... ... @@ -137,6 +137,17 @@ class SurfaceManager():
137 137 UpdateProgress(smoother, "Smoothing surface..."))
138 138 polydata = smoother.GetOutput()
139 139  
  140 + # Filter used to detect and fill holes. Only fill boundary edges holes.
  141 + #TODO: Hey! This piece of code is the same from
  142 + # polydata_utils.FillSurfaceHole, we need to review this.
  143 + filled_polydata = vtk.vtkFillHolesFilter()
  144 + filled_polydata.SetInput(polydata)
  145 + filled_polydata.SetHoleSize(500)
  146 + filled_polydata.AddObserver("ProgressEvent", lambda obj, evt:
  147 + UpdateProgress(filled_polydata,
  148 + "Filling polydata..."))
  149 + polydata = filled_polydata.GetOutput()
  150 +
140 151 # Orient normals from inside to outside
141 152 normals = vtk.vtkPolyDataNormals()
142 153 normals.SetInput(polydata)
... ... @@ -231,4 +242,4 @@ class SurfaceManager():
231 242 # Update value in project's surface_dict
232 243 proj = Project()
233 244 proj.surface_dict[index].colour = colour
234   - ps.Publisher().sendMessage('Render volume viewer')
235 245 \ No newline at end of file
  246 + ps.Publisher().sendMessage('Render volume viewer')
... ...
invesalius/reader/dicom.py
  Diff comments   View file @3b3ba25
... ... @@ -1339,7 +1339,7 @@ class Parser():
1339 1339 img = self.gdcm_reader.GetImage()
1340 1340 direc_cosines = img.GetDirectionCosines()
1341 1341 orientation = gdcm.Orientation()
1342   - type = orientation.GetType(direc_cosines)
  1342 + type = orientation.GetType(tuple(direc_cosines))
1343 1343 label = orientation.GetLabel(type)
1344 1344  
1345 1345 if (label):
... ...