Update README.md

Paulo Henrique Junqueira Amorim
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Showing 1 changed file with 20 additions and 18 deletions Show diff stats
README.md
@@ -18,64 +18,66 @@ InVesalius generates 3D medical imaging reconstructions based on a sequence of 2
 #### Linux 64 bits (tested on Ubuntu 16.04)
-`sudo apt-get install python-wxgtk3.0 python-numpy python-scipy python-pil python-matplotlib python-skimage python-nibabel python-serial python-psutil python-vtk6 python-vtkgdcm python-gdcm python-casmoothing cython`
+1) Install the packages: `sudo apt-get install python-wxgtk3.0 python-numpy python-scipy python-pil python-matplotlib python-skimage python-nibabel python-serial python-psutil python-vtk6 python-vtkgdcm python-gdcm python-casmoothing cython`
+
+2) Entrer InVesalius folder and execute: `python setup.py build_ext --inplace`
 #### Windows 64 bits (tested on Windows 7)
 1) **Python 2.7.8** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/python-2.7.8.amd64.msi
-* Create a system variable named *%PYTHONPATH%* with values: *C:\Python27;C:\Python27\Lib;C:\Python27\Lib\site-packages;C:\Python27\Scripts;*
-* Insert into *Path* varibale the value *%PYTHONPATH%*
+* Create a system variable named `%PYTHONPATH%` with values: `C:\Python27;C:\Python27\Lib;C:\Python27\Lib\site-packages;C:\Python27\Scripts;`
+* Insert into `Path` varibale the value `%PYTHONPATH%`
 2) **wxPython 3.0.2** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/wxPython3.0-win64-3.0.2.0-py27.exe
 3) **PIP** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/get-pip.py
-* Download the script and execute *python get-pip.py* 
+* Download the script and execute `python get-pip.py` 
 4) **Numpy 1.11.0** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/numpy-1.11.0+mkl-cp27-cp27m-win_amd64.whl
-* Download and execute *pip install numpy-1.11.0+mkl-cp27-cp27m-win_amd64.whl*
+* Download and execute `pip install numpy-1.11.0+mkl-cp27-cp27m-win_amd64.whl`
 5) **Scipy 0.17.1** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/scipy-0.17.1-cp27-cp27m-win_amd64.whl
-* Download and execute *pip install scipy-0.17.1-cp27-cp27m-win_amd64.whl*
+* Download and execute `pip install scipy-0.17.1-cp27-cp27m-win_amd64.whl`
 6) **Pillow (new Python Image Library)** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/Pillow-3.2.0-cp27-cp27m-win_amd64.whl
-* Download and execute *pip install Pillow-3.2.0-cp27-cp27m-win_amd64.whl*
+* Download and execute `pip install Pillow-3.2.0-cp27-cp27m-win_amd64.whl`
 7) **Matplotlib 1.5.1** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/matplotlib-1.5.1-cp27-none-win_amd64.whl
-* Download and execute *pip install matplotlib-1.5.1-cp27-none-win_amd64.whl*
+* Download and execute `pip install matplotlib-1.5.1-cp27-none-win_amd64.whl`
 8) **Scikit Image 0.12.3** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/scikit_image-0.12.3-cp27-cp27m-win_amd64.whl 
-* Download and execute *pip install scikit_image-0.12.3-cp27-cp27m-win_amd64.whl*
+* Download and execute `pip install scikit_image-0.12.3-cp27-cp27m-win_amd64.whl`
 9) **Nibabel 2.0.2** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/nibabel-2.0.2-py2.py3-none-any.whl
-* Download and execute *pip install nibabel-2.0.2-py2.py3-none-any.whl*
+* Download and execute `pip install nibabel-2.0.2-py2.py3-none-any.whl`
 10) **PySerial 3.0.1** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/pyserial-3.0.1-py2.py3-none-any.whl
-* Download and execute *pip install pyserial-3.0.1-py2.py3-none-any.whl*
+* Download and execute `pip install pyserial-3.0.1-py2.py3-none-any.whl`
 11) **PSUtil 4.2.0** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/psutil-4.2.0-cp27-cp27m-win_amd64.whl
-* Download and execute *pip install psutil-4.2.0-cp27-cp27m-win_amd64.whl*
+* Download and execute `pip install psutil-4.2.0-cp27-cp27m-win_amd64.whl`
 12) **VTK 6.3.0** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/vtk.zip
-* Download and unzip on *C:\Python27\Lib\site-packages* and add on *%PYTHONPATH%* variable the value *C:\Python27\Lib\site-packages\vtk\vtk;*
+* Download and unzip on `C:\Python27\Lib\site-packages` and add on `%PYTHONPATH%` variable the value `C:\Python27\Lib\site-packages\vtk\vtk;`
 13) **GDCM (trunk)** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/gdcm.zip
-* Download and unzip on *C:\Python27\Lib\site-packages* and add on *%PYTHONPATH%* variable the value *C:\Python27\Lib\site-packages\gdcm;*
+* Download and unzip on `C:\Python27\Lib\site-packages` and add on `%PYTHONPATH%` variable the value `C:\Python27\Lib\site-packages\gdcm;`
 14) **CA Smoothing** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/python_ca_smoothing.zip
-* Download and unzip the two files on *C:\Python27\Lib\site-packages*
+* Download and unzip the two files on `C:\Python27\Lib\site-packages`
 15) **Visual C++ 2015 Runtime** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/vcredist_x64.exe
 * Download and install
 16) **Cython**
-* Execute *python install cython*
+* Execute `python install cython`
 17) **Compiled InVesalius parts**
-* Option 1: Install [Microsoft Visual Studio Community 2015](https://www.visualstudio.com/pt-br/downloads/download-visual-studio-vs.aspx) and execute *python setup.py build_ext --inplace* on invesalius3 folder.
+* Option 1: Install [Microsoft Visual Studio Community 2015](https://www.visualstudio.com/pt-br/downloads/download-visual-studio-vs.aspx) and execute `python setup.py build_ext --inplace` on invesalius3 folder.
-* Option 2: Download compiled parts and unzip on *invesalius3/invesalius/data* - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/invesalius-compiled_parts.zip
+* Option 2: Download compiled parts and unzip on `invesalius3/invesalius/data` - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/invesalius-compiled_parts.zip
 Special thank's to Christoph Gohlke, Laboratory for Fluorescence Dynamics, University of California, Irvine for providing the pre-compiled of various [python packages for Windows 64 bits](http://www.lfd.uci.edu/~gohlke/pythonlibs/)