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Commit 9a149f944c2e96174e36515d0f07b4d8a2e123b1

Authored by tatiana
1 parent e9b40211
Exists in master and in 6 other branches beta3, beta4, inv3.0.1, invesalius-libift, usp-navegador, wxgtk3_b5

ADD: Single slice preview in import panel (under devel)

Showing 4 changed files with 157 additions and 5 deletions   Show diff stats
invesalius/data/vtk_utils.py
  Diff comments   View file @9a149f9
@@ -113,7 +113,15 @@ class Text(object): @@ -113,7 +113,15 @@ class Text(object):
113 self.mapper.SetInput(str(value)) 113 self.mapper.SetInput(str(value))
114 114
115 def SetPosition(self, position): 115 def SetPosition(self, position):
116 - self.actor.SetPositionCoordinate().SetValue(position) 116 + self.actor.GetPositionCoordinate().SetValue(position[0],
  117 + position[1])
  118 +
  119 + def SetJustificationToRight(self):
  120 + self.property.SetJustificationToRight()
  121 +
  122 + def SetVerticalJustificationToBottom(self):
  123 + self.property.SetVerticalJustificationToBottom()
  124 +
117 125
118 def Show(self, value=1): 126 def Show(self, value=1):
119 if value: 127 if value:
invesalius/gui/dicom_preview_panel.py
  Diff comments   View file @9a149f9
@@ -22,14 +22,15 @@ @@ -22,14 +22,15 @@
22 22
23 #TODO: To create a beautiful API 23 #TODO: To create a beautiful API
24 import wx 24 import wx
25 -import vtk  
26 -import vtkgdcm  
27 -  
28 import wx.lib.agw.buttonpanel as bp 25 import wx.lib.agw.buttonpanel as bp
  26 +import vtk
29 from vtk.wx.wxVTKRenderWindowInteractor import wxVTKRenderWindowInteractor 27 from vtk.wx.wxVTKRenderWindowInteractor import wxVTKRenderWindowInteractor
30 -from reader import dicom_reader 28 +import vtkgdcm
31 29
32 30
  31 +import constants as const
  32 +from reader import dicom_reader
  33 +import data.vtk_utils as vtku
33 34
34 NROWS = 3 35 NROWS = 3
35 NCOLS = 6 36 NCOLS = 6
@@ -48,7 +49,105 @@ EVT_SELECT_SERIE = wx.PyEventBinder(myEVT_SELECT_SERIE, 1) @@ -48,7 +49,105 @@ EVT_SELECT_SERIE = wx.PyEventBinder(myEVT_SELECT_SERIE, 1)
48 myEVT_CLICK = wx.NewEventType() 49 myEVT_CLICK = wx.NewEventType()
49 EVT_CLICK = wx.PyEventBinder(myEVT_CLICK, 1) 50 EVT_CLICK = wx.PyEventBinder(myEVT_CLICK, 1)
50 51
  52 +class SingleImagePreview(wx.Panel):
  53 + def __init__(self, parent):
  54 + wx.Panel.__init__(self, parent, -1)
  55 + self.__init_vtk()
  56 + self.filelist = []
  57 + self.current_index = 0
  58 + self.window_width = const.WINDOW_LEVEL["Bone"][0]
  59 + self.window_level = const.WINDOW_LEVEL["Bone"][1]
  60 +
  61 + def __init_vtk(self):
  62 + actor = vtk.vtkImageActor()
  63 + self.actor = actor
  64 +
  65 + LEFT_UP = (X, Y) = const.TEXT_POSITION
  66 + text_image_size = vtku.Text()
  67 + text_image_size.SetPosition(LEFT_UP)
  68 + text_image_size.SetValue("IMAGE SIZE")
  69 +
  70 + LEFT_DOWN = (X, 1-Y)
  71 + text_image_location = vtku.Text()
  72 + text_image_location.SetVerticalJustificationToBottom()
  73 + text_image_location.SetPosition(LEFT_DOWN)
  74 + text_image_location.SetValue("IMAGE LOCAL")
  75 +
  76 + value = "ID PATIENT\n TEST"
  77 + RIGHT_UP = (1-X, Y)
  78 + text_patient = vtku.Text()
  79 + text_patient.SetJustificationToRight()
  80 + text_patient.SetPosition(RIGHT_UP)
  81 + text_patient.SetValue(value)
  82 +
  83 + value = "DATE\n Made in InVesalius"
  84 + RIGHT_DOWN = (1-X, 1-Y)
  85 + text_acquisition = vtku.Text()
  86 + text_acquisition.SetJustificationToRight()
  87 + text_acquisition.SetVerticalJustificationToBottom()
  88 + text_acquisition.SetPosition(RIGHT_DOWN)
  89 + text_acquisition.SetValue(value)
  90 +
  91 + renderer = vtk.vtkRenderer()
  92 + renderer.AddActor(actor)
  93 + renderer.AddActor(text_image_size.actor)
  94 + renderer.AddActor(text_image_location.actor)
  95 + renderer.AddActor(text_patient.actor)
  96 + renderer.AddActor(text_acquisition.actor)
  97 + self.renderer = renderer
  98 +
  99 + style = vtk.vtkInteractorStyleImage()
  100 +
  101 + interactor = wxVTKRenderWindowInteractor(self, -1,
  102 + size=wx.Size(400,400))
  103 + interactor.GetRenderWindow().AddRenderer(renderer)
  104 + interactor.SetInteractorStyle(style)
  105 + interactor.Render()
  106 + self.interactor = interactor
  107 +
  108 + sizer = wx.BoxSizer(wx.VERTICAL)
  109 + sizer.Add(interactor, 1, wx.GROW|wx.EXPAND)
  110 + sizer.Fit(self)
  111 + self.SetSizer(sizer)
  112 + self.Layout()
  113 + self.Update()
  114 + self.SetAutoLayout(1)
  115 +
  116 +
  117 + def SetDicomGroup(self, group):
  118 + self.dicom_list = group.GetHandSortedList()
  119 + self.current_index = 0
  120 + self.ShowSlice()
51 121
  122 + def ShowSlice(self):
  123 + index = self.current_index
  124 + dicom = self.dicom_list[index]
  125 +
  126 + filename = dicom.image.file
  127 + window_level = dicom.image.level
  128 + window_width = dicom.image.window
  129 +
  130 + reader = vtkgdcm.vtkGDCMImageReader()
  131 + reader.SetFileName(filename)
  132 +
  133 + colorer = vtk.vtkImageMapToWindowLevelColors()
  134 + colorer.SetInput(reader.GetOutput())
  135 + colorer.SetWindow(float(window_width))
  136 + colorer.SetLevel(float(window_level))
  137 +
  138 + a = vtkgdcm.vtkImageColorViewer()
  139 + a.SetInput(colorer.GetOutput())
  140 + #a.SetColorWindow(200)
  141 + #a.SetColorLevel(100)
  142 + a.Render()
  143 + import time
  144 + time.sleep(5)
  145 +
  146 +
  147 + self.actor.SetInput(colorer.GetOutput())
  148 + #self.actor.SetInput(reader.GetOutput())
  149 + self.renderer.ResetCamera()
  150 + self.interactor.Render()
52 151
53 152
54 153
invesalius/gui/frame.py
  Diff comments   View file @9a149f9
@@ -122,6 +122,7 @@ class Frame(wx.Frame): @@ -122,6 +122,7 @@ class Frame(wx.Frame):
122 122
123 aui_manager.AddPane(imp.Panel(self), wx.aui.AuiPaneInfo(). 123 aui_manager.AddPane(imp.Panel(self), wx.aui.AuiPaneInfo().
124 Name("Import").Centre().Hide(). 124 Name("Import").Centre().Hide().
  125 + MaximizeButton(True).Floatable(True).
125 Caption("Preview medical data to be reconstructed"). 126 Caption("Preview medical data to be reconstructed").
126 CaptionVisible(True)) 127 CaptionVisible(True))
127 128
invesalius/gui/import_panel.py
  Diff comments   View file @9a149f9
@@ -318,4 +318,48 @@ class SeriesPanel(wx.Panel): @@ -318,4 +318,48 @@ class SeriesPanel(wx.Panel):
318 class SlicePanel(wx.Panel): 318 class SlicePanel(wx.Panel):
319 def __init__(self, parent): 319 def __init__(self, parent):
320 wx.Panel.__init__(self, parent, -1) 320 wx.Panel.__init__(self, parent, -1)
  321 + self.__init_gui()
  322 + self.__bind_evt()
  323 +
  324 + def __bind_evt(self):
  325 + ps.Publisher().subscribe(self.ShowDicomSeries, 'Load dicom preview')
  326 + ps.Publisher().subscribe(self.SetDicomSeries, 'Load group into import panel')
  327 + ps.Publisher().subscribe(self.SetPatientSeries, 'Load patient into import panel')
  328 +
  329 + def __init_gui(self):
321 self.SetBackgroundColour((255,255,255)) 330 self.SetBackgroundColour((255,255,255))
  331 + print "----------------------------"
  332 + self.dicom_preview = dpp.SingleImagePreview(self)
  333 +
  334 + sizer = wx.BoxSizer(wx.VERTICAL)
  335 + sizer.Add(self.dicom_preview, 1, wx.GROW|wx.EXPAND)
  336 + sizer.Fit(self)
  337 + self.SetSizer(sizer)
  338 + self.Layout()
  339 + self.Update()
  340 + self.SetAutoLayout(1)
  341 + self.sizer = sizer
  342 +
  343 + def SetPatientSeries(self, pubsub_evt):
  344 + patient = pubsub_evt.data
  345 + group = patient.GetGroups()[0]
  346 + self.dicom_preview.SetDicomGroup(group)
  347 + self.sizer.Layout()
  348 + self.Update()
  349 +
  350 +
  351 + def SetDicomSeries(self, pubsub_evt):
  352 + group = pubsub_evt.data
  353 + self.dicom_preview.SetDicomGroup(group)
  354 + self.sizer.Layout()
  355 + self.Update()
  356 +
  357 +
  358 + def ShowDicomSeries(self, pubsub_evt):
  359 + patient = pubsub_evt.data
  360 + group = patient.GetGroups()[0]
  361 + self.dicom_preview.SetDicomGroup(group)
  362 + self.sizer.Layout()
  363 + self.Update()
  364 +
  365 +