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Commit c8c3f8afe1feb511aefe035435abee1e4804edae

Authored by Thiago Franco de Moraes
1 parent 27bd47f0
Exists in master

Using IPPSorter when dicom orientation is coronal

Showing 2 changed files with 21 additions and 21 deletions   Show diff stats
invesalius/reader/dicom_grouper.py
  Diff comments   View file @c8c3f8a
@@ -130,23 +130,23 @@ class DicomGroup: @@ -130,23 +130,23 @@ class DicomGroup:
130 else: 130 else:
131 filelist = [dicom.image.file for dicom in 131 filelist = [dicom.image.file for dicom in
132 self.slices_dict.values()] 132 self.slices_dict.values()]
133 - 133 +
134 # Sort slices using GDCM 134 # Sort slices using GDCM
135 - if (self.dicom.image.orientation_label != "CORONAL"):  
136 - #Organize reversed image  
137 - sorter = gdcm.IPPSorter()  
138 - sorter.SetComputeZSpacing(True)  
139 - sorter.SetZSpacingTolerance(1e-10)  
140 - try:  
141 - sorter.Sort([utils.encode(i, const.FS_ENCODE) for i in filelist])  
142 - except TypeError:  
143 - sorter.Sort(filelist)  
144 - filelist = sorter.GetFilenames() 135 + #if (self.dicom.image.orientation_label != "CORONAL"):
  136 + #Organize reversed image
  137 + sorter = gdcm.IPPSorter()
  138 + sorter.SetComputeZSpacing(True)
  139 + sorter.SetZSpacingTolerance(1e-10)
  140 + try:
  141 + sorter.Sort([utils.encode(i, const.FS_ENCODE) for i in filelist])
  142 + except TypeError:
  143 + sorter.Sort(filelist)
  144 + filelist = sorter.GetFilenames()
145 145
146 # for breast-CT of koning manufacturing (KBCT) 146 # for breast-CT of koning manufacturing (KBCT)
147 if list(self.slices_dict.values())[0].parser.GetManufacturerName() == "Koning": 147 if list(self.slices_dict.values())[0].parser.GetManufacturerName() == "Koning":
148 filelist.sort() 148 filelist.sort()
149 - 149 +
150 return filelist 150 return filelist
151 151
152 def GetHandSortedList(self): 152 def GetHandSortedList(self):
invesalius/reader/dicom_reader.py
  Diff comments   View file @c8c3f8a
@@ -82,15 +82,15 @@ def SelectLargerDicomGroup(patient_group): @@ -82,15 +82,15 @@ def SelectLargerDicomGroup(patient_group):
82 def SortFiles(filelist, dicom): 82 def SortFiles(filelist, dicom):
83 # Sort slices 83 # Sort slices
84 # FIXME: Coronal Crash. necessary verify 84 # FIXME: Coronal Crash. necessary verify
85 - if (dicom.image.orientation_label != "CORONAL"):  
86 - ##Organize reversed image  
87 - sorter = gdcm.IPPSorter()  
88 - sorter.SetComputeZSpacing(True)  
89 - sorter.SetZSpacingTolerance(1e-10)  
90 - sorter.Sort(filelist)  
91 -  
92 - #Getting organized image  
93 - filelist = sorter.GetFilenames() 85 + # if (dicom.image.orientation_label != "CORONAL"):
  86 + ##Organize reversed image
  87 + sorter = gdcm.IPPSorter()
  88 + sorter.SetComputeZSpacing(True)
  89 + sorter.SetZSpacingTolerance(1e-10)
  90 + sorter.Sort(filelist)
  91 +
  92 + #Getting organized image
  93 + filelist = sorter.GetFilenames()
94 94
95 return filelist 95 return filelist
96 96