invesalius / invesalius3

11 Oct, 2021

2 commits

2a9da902 Merge pull request #376 from okahilak/add-script-for-sending-events-to-invesalius ... Browse Code »
```
ADD: Script for sending events to InVesalius via Socket.IO
```
Victor Hugo Souza
2021-10-11 08:40:33 +0300
310b5d08 Merge pull request #375 from okahilak/allow-selecting-baud-rate-for-serial-port ... Browse Code »
```
MOD: Allow selecting baud rate for serial port communication
```
Victor Hugo Souza
2021-10-11 08:38:15 +0300

08 Oct, 2021

5 commits

a406f61e Add pytorch backend to brain segmentation (#365) ... Browse Code »

* added pytorch to requirements.txt and showing in GUI

* segmenting using pytorch

* Remove debug prints

* Added an function to download a file and save it localy

* Downloading the weight using the developed function to download file

2021-10-08 16:16:53 -0300

65d1a237 Review comment: Move added requirements to optional-requirements.txt Browse Code »

Olli-Pekka Kahilakoski
2021-10-08 17:46:58 +0300
eb4c656f Review comment: Use non-configurable baud rate for serial port for now ... Browse Code »
```
However, ensure that the configurable baud rate can be implemented back
easily if needed (namely, by reverting this commit).
```
Olli-Pekka Kahilakoski
2021-10-08 17:39:54 +0300
a07dc035 ADD: Script for sending events to InVesalius via Socket.IO Browse Code »

Olli-Pekka Kahilakoski
2021-10-08 13:56:10 +0300

5acf7461 MOD: Allow selecting baud rate for serial port communication ... Browse Code »

Other changes:

- Disallow not selecting COM port in COM port selection dialog by
  defaulting to the first COM port in the list. Previously, it was
  possible to pass an empty string as the COM port by not making
  the selection.

- When the "Serial port" checkbox is pressed and the user presses
  "Cancel" in the dialog that is opened, uncheck the "Serial port" checkbox
  instead of keeping it checked.

- Be explicit about if the serial port is in use or not, instead of inferring
  it from the COM port variable being set or not.

- Pass the serial port parameters (COM port, baud rate) directly to the
  Navigation class, instead of passing them through NeuronavigationPanel.

- Minor improvements to style and naming of the variables.

2021-10-08 12:35:07 +0300

07 Oct, 2021

8 commits

9460b9cd Added very basic support for sessions (#374) ... Browse Code »
```
Markers code made more robust
Minor fixes
UI for sessions is quite messy, needs polishing
```
Andrey Zhdanov
2021-10-07 23:13:05 -0300
db6e8b0d Merge pull request #373 from okahilak/fix-stop-navigation-when-serial-port-connection-is-none ... Browse Code »
```
FIX: StopNavigation function when serial port connection has not been formed
```
Victor Hugo Souza
2021-10-07 18:04:44 +0300

aa4f4cad FIX: StopNavigation function when serial port connection has not been formed ... Browse Code »

StopNavigation function is called, e.g., when InVesalius is quitted. If the
serial port was enabled in the UI but navigation had not been started, it
previously caused an error because serial_port_connection variable was None.

2021-10-07 17:04:32 +0300

4f539b46 Merge pull request #372 from okahilak/fix-using-pedal-for-setting-fiducials ... Browse Code »
```
FIX: Using pedal for setting fiducials
```
Victor Hugo Souza
2021-10-07 16:09:44 +0300
3e89c5ce Review comment: Remove printing to console when pedal state changes Browse Code »

Olli-Pekka Kahilakoski
2021-10-07 14:45:04 +0300
490d87a8 Merge pull request #369 from rmatsuda/Thread-for-coordinates ... Browse Code »
```
Creation of a new thread for coordinates acquisition
```
Victor Hugo Souza
2021-10-07 11:56:00 +0300

8a14b309 FIX: Using pedal for setting fiducials ... Browse Code »

Previously, the callback for setting the fiducial was removed while
executing the callback. However, that did not work because it made
the list of callbacks that PedalConnection looped over change on the
fly. Instead, use 'remove when released' option for callbacks to
automatically remove the callback when the pedal is released.

2021-10-07 11:51:12 +0300

b966468a MOD: Support 'remove when released' option in pedal callbacks ... Browse Code »
```
Also, send 'Pedal state changed' events regardless of if any callbacks
have been registered or not.
```
Olli-Pekka Kahilakoski
2021-10-07 11:40:30 +0300

06 Oct, 2021

8 commits

0b8581bf FIX: Sensor ID inside set coordinates ... Browse Code »
```
-change coilID to objID
```
Renan
2021-10-06 14:23:13 +0300
dd8b84f9 Merge pull request #371 from okahilak/additional-fix-for-registering-tracker-location-using-pedal ... Browse Code »
```
FIX: Additional bug in registering tracker location using pedal
```
Victor Hugo Souza
2021-10-06 14:03:24 +0300
b9c4f1cf FIX: Additional bug in registering tracker location using pedal Browse Code »

Olli-Pekka Kahilakoski
2021-10-06 14:01:16 +0300
a4e8b13a Merge pull request #370 from okahilak/fix-registering-tracker-location-using-pedal ... Browse Code »
```
FIX: Registering tracker location using pedal in calibration
```
Victor Hugo Souza
2021-10-06 13:57:54 +0300
356cada5 FIX: Registering tracker location using pedal in calibration Browse Code »

Olli-Pekka Kahilakoski
2021-10-06 13:55:33 +0300
278fb9b3 FIX: stop thread when tracker is disconnected Browse Code »

Renan
2021-10-06 10:39:38 +0300
8acbc267 FIX: minor standardization Browse Code »

Renan
2021-10-06 09:56:19 +0300
1ba56fa2 FIX: ICP get coordinates Browse Code »

Renan
2021-10-06 09:44:43 +0300

05 Oct, 2021

2 commits

85f1368a ADD thread Browse Code »

Renan
2021-10-05 22:47:49 +0300
53accd20 Merge pull request #367 from andreyzhd/markers-list-improvements ... Browse Code »
```
Marker code refactoring
```
Victor Hugo Souza
2021-10-05 09:32:21 +0300

04 Oct, 2021

2 commits

2560d18f Merge branch 'master' into markers-list-improvements Browse Code »

Victor Hugo Souza
2021-10-04 12:15:34 +0300
ac47aa77 - Added new class for storing markers ... Browse Code »
```
- General marker code cleanup
- Marker's label decoupled from the target status
```
Andrey Zhdanov
2021-10-04 00:36:54 +0300

30 Sep, 2021

3 commits

574c9620 Merge pull request #366 from rmatsuda/minor_FIX_markers_colors ... Browse Code »
```
FIX: change marker colors
```
Victor Hugo Souza
2021-09-30 15:35:58 +0300
ca212a82 FIX: SetNewColor Browse Code »

Renan
2021-09-30 15:05:39 +0300
97f76e21 FIX: change marker colors ... Browse Code »
```
-minor: set size to trackers combobox
```
Renan
2021-09-30 14:46:24 +0300

29 Sep, 2021

1 commit

23bc2c04 Markers code cleanup (#364) ... Browse Code »
```
* Removed the legacy (.mks) marker loading code.

* minor cleanup
```
Andrey Zhdanov
2021-09-29 13:51:28 -0300

27 Sep, 2021

6 commits

5edcfb7d updated ignore Browse Code »

Thiago Franco de Moraes
2021-09-27 15:46:05 -0300
9bbd209d Merge remote-tracking branch 'upstream/master' Browse Code »

Thiago Franco de Moraes
2021-09-27 15:43:41 -0300
621c80bc ignoring .idea folder (closes #360) Browse Code »

Thiago Franco de Moraes
2021-09-27 15:41:27 -0300
265cab23 Merge pull request #347 from okahilak/export-world-coordinates-into-marker-file ... Browse Code »
```
MOD: Export world coordinates into marker file
```
Victor Hugo Souza
2021-09-27 14:51:39 +0300
b2c66ba7 FIX: Invert affine for converting to the world space system Browse Code »

Victor Hugo Souza
2021-09-27 14:51:03 +0300
50563675 FIX: Replace marker_id by label_id on CreateMarker event Browse Code »

Victor Hugo Souza
2021-09-27 09:28:10 +0300

24 Sep, 2021

1 commit

af27358d Merge branch 'master' into export-world-coordinates-into-marker-file Browse Code »

okahilak
2021-09-24 18:32:16 +0300

23 Sep, 2021

2 commits

58d46d18 Cleanup of the markers code (#358) Browse Code »

Andrey Zhdanov
2021-09-23 13:52:47 -0300
96989be9 CLP: Move ICP class to its own file (icp.py) (#356) ... Browse Code »
```
* CLP: Move ICP class to its own file (icp.py)

* CLP: Remove unused imports from task_navigator.py
```
okahilak
2021-09-23 11:44:45 -0300