invesalius / invesalius3

03 Aug, 2021

1 commit

4054e4ec Review comments: Fix bugs in NeuronavigationPanel when closing project Browse Code »

Olli-Pekka Kahilakoski
2021-08-03 14:46:35 +0300

29 Jul, 2021

1 commit

55ce1205 MOD: Refactor task_navigator.py ... Browse Code »

- Some steps towards decoupling GUI and domain logic, namely, by adding
  classes Navigation and Tracker, which take some of the responsibility
  previously handled by NeuronavigationPanel.

- This is done to prepare to do some changes in the GUI, such as
  moving "Navigate" button elsewhere -- previously, it was hard
  to do due to the elements in the GUI being tightly coupled with the
  implementation of navigation.

- Also some other minor clean-up and style improvements, such as
  using more consistent and more descriptive variable names

2021-07-29 16:52:55 +0300

28 Jul, 2021

1 commit

9d79c88d ADD: Optional use of trigger pedal (#297) ... Browse Code »

* ADD: Optional use of trigger pedal

- Show the pedal status in a checkbox in the UI. Add actual
  functions for the pedal later.

- For now, hide the feature behind a feature-flag (--use-pedal)

* Review comment: Make MIDI requirements optional

Co-authored-by: Olli-Pekka Kahilakoski <olli-pekka.kahilakoski@aalto.fi>

2021-07-28 11:18:32 -0300

27 Jul, 2021

1 commit

f2fd855b Navigation ICP coregistration improvements (#299) ... Browse Code »

* MOD: Get raw coordinates to create points from probe

* ENH: Improve processing data with a new thread
    -ADD: Enable/Disable Done and Apply buttons

* MOD: show the amount of poses recorded

* FIX: removes ICP matrix after disconnect tracker

2021-07-27 15:02:01 -0300

26 Jul, 2021

1 commit

7fae7387 Ctrl+Shift+M -> Ctrl+Shift+P to preview mask in 3D Browse Code »

Thiago Franco de Moraes
2021-07-26 13:54:17 -0300

20 Jul, 2021

4 commits

3fd08595 MOD: Decouple navigation starting/stopping from the UI (#290) ... Browse Code »

Essentially, start/stop navigation using "Start navigation"
and "Stop navigation" events.

Co-authored-by: Olli-Pekka Kahilakoski <olli-pekka.kahilakoski@aalto.fi>

2021-07-20 19:10:18 -0300

f5086bb0 FIX: A bug in navigation without a target (#296) ... Browse Code »

- Check that the target is not None before transforming it in
  CoordinateCorregistrate class.

Co-authored-by: Olli-Pekka Kahilakoski <olli-pekka.kahilakoski@aalto.fi>

2021-07-20 19:09:59 -0300

2fbc32ff FIX: Loading image fiducials from disk (#295) ... Browse Code »

- It had broken due to a mix-up between fiducial name ("LE") and
  label ("LEI"). Fix by doing the mapping from label (which is
  stored on disk) to name before triggering 'Set image fiducial'
  event.

Co-authored-by: Olli-Pekka Kahilakoski <olli-pekka.kahilakoski@aalto.fi>

2021-07-20 19:09:43 -0300

30ae50b1 FIX: Locale problem crashing with Windows 10 and certain locales (#283) ... Browse Code »

- FIX: Locale problem crashing with Windows 10 and certain locales (closes #283). Fix locale problem by calling self.ResetLocale() instead

Co-authored-by: Olli-Pekka Kahilakoski <olli-pekka.kahilakoski@aalto.fi>

2021-07-20 15:31:46 -0300

19 Jul, 2021

1 commit

4aea8c23 Polaris p4 support (#281) ... Browse Code »

* ADD: support polaris P4

* ENH: remove tracker IDs

* ADD: PolarisP4 roms files

* FIX: disconnect - debug approach tracker

2021-07-19 15:11:03 -0300

18 Jul, 2021

2 commits

5af2a8ad FIX: Neuronavigation not working when target not defined (#291) ... Browse Code »

- self.target was initialized in the wrong class, causing the neuronavigation
  to not work when a target is not defined. Move the initialization to the
  correct class.
- Due to a minor mistake in previous merge conflict resolution, UpdateTarget
  function was defined twice. Remove the redundant definition.

Co-authored-by: Olli-Pekka Kahilakoski <olli-pekka.kahilakoski@aalto.fi>

2021-07-18 21:40:45 -0300

65fb4272 MOD: Increase SLEEP_NAVIGATION parameter to decrease CPU load during navigation (#292) ... Browse Code »
```
Co-authored-by: Olli-Pekka Kahilakoski <olli-pekka.kahilakoski@aalto.fi>
```
okahilak
2021-07-18 21:35:56 -0300

16 Jul, 2021

2 commits

64aba28d Removed some unused prints Browse Code »

Thiago Franco de Moraes
2021-07-16 20:14:54 -0300
01bb8c78 is not -1 -> != -1 Browse Code »

Thiago Franco de Moraes
2021-07-16 20:09:24 -0300

15 Jul, 2021

5 commits

ef7e253b Fiducial-related refactoring (#288) ... Browse Code »

* MOD: Set fiducials via 'Set fiducial' event

* MOD: Create 'Set tracker fiducial' event

* MOD: Decouple fiducial name (e.g., 'LE') from marker and button name ('LEI')

Co-authored-by: Olli-Pekka Kahilakoski <olli-pekka.kahilakoski@aalto.fi>

2021-07-15 15:14:10 -0300

054fa427 Allow setting markers remotely by using 'Set markers' event (#289) ... Browse Code »

* ADD: 'Set markers' event to set all markers directly

Not used by InVesalius, but useful when controlling InVesalius
remotely and wanting to override InVesalius's own markers.

* MOD: Allow updating target with 'Set markers' event

* MOD: Remove target in 'Set markers' event if no target is selected

* MOD: Enable target button when setting target remotely

Co-authored-by: Olli-Pekka Kahilakoski <olli-pekka.kahilakoski@aalto.fi>

2021-07-15 15:13:10 -0300

3cdb23d0 ADD: Send 'Coil at target' message (#287) ... Browse Code »

Not used by InVesalius, but useful when wanting to have the
information about coil being at the target or not outside
InVesalius.

Co-authored-by: Olli-Pekka Kahilakoski <olli-pekka.kahilakoski@aalto.fi>

2021-07-15 15:12:03 -0300

3a8009a5 ADD: Another debug tracker, approaching the target (#284) ... Browse Code »
```
Co-authored-by: Olli-Pekka Kahilakoski <olli-pekka.kahilakoski@aalto.fi>
```
okahilak
2021-07-15 15:08:49 -0300
3f0357e3 InVesalius main windows was being hiden when using region growing in 3D Browse Code »

Thiago Franco de Moraes
2021-07-15 14:39:59 -0300

12 Jul, 2021

1 commit

7adbbad0 No-gui was not working (fix #280) Browse Code »

Thiago Franco de Moraes
2021-07-12 11:39:07 -0300

01 Jul, 2021

1 commit

db494172 shebang python -> python3 Browse Code »

Thiago Franco de Moraes
2021-07-01 16:43:33 -0300

30 Jun, 2021

1 commit

350e278b Tracker optitrack python 37 (#279) ... Browse Code »

* add initial modifications to add optitrack tracker

* fix variable names on coordinate function of optitrack

* add transformation euler from quaternion

* fix input order of quaternions to euler_from_quaternion function

* add conversion to degrees in quaternion transformation on optitrack funcion

* fix scale

* fix coordinates order in array and modify X,Y,Z coordinate system in optitrack coordinate function

* add update cameras/frame function before Run function

* add Run function after Initialize

* removed update before Run optitrack function

* reduce Sleep_navigation variable

* add documentation to optitrack functions

* add condition to when optitrack hardware Key is not found