task_surface.py
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#--------------------------------------------------------------------------
# Software: InVesalius - Software de Reconstrucao 3D de Imagens Medicas
# Copyright: (C) 2001 Centro de Pesquisas Renato Archer
# Homepage: http://www.softwarepublico.gov.br
# Contact: invesalius@cti.gov.br
# License: GNU - GPL 2 (LICENSE.txt/LICENCA.txt)
#--------------------------------------------------------------------------
# Este programa e software livre; voce pode redistribui-lo e/ou
# modifica-lo sob os termos da Licenca Publica Geral GNU, conforme
# publicada pela Free Software Foundation; de acordo com a versao 2
# da Licenca.
#
# Este programa eh distribuido na expectativa de ser util, mas SEM
# QUALQUER GARANTIA; sem mesmo a garantia implicita de
# COMERCIALIZACAO ou de ADEQUACAO A QUALQUER PROPOSITO EM
# PARTICULAR. Consulte a Licenca Publica Geral GNU para obter mais
# detalhes.
#--------------------------------------------------------------------------
import sys
import wx
import wx.lib.hyperlink as hl
from wx.lib.pubsub import pub as Publisher
import constants as const
import data.slice_ as slice_
import gui.dialogs as dlg
import gui.widgets.foldpanelbar as fpb
import gui.widgets.colourselect as csel
import gui.widgets.platebtn as pbtn
import project as prj
import utils as utl
#INTERPOLATION_MODE_LIST = ["Cubic", "Linear", "NearestNeighbor"]
MIN_TRANSPARENCY = 0
MAX_TRANSPARENCY = 100
#############
BTN_NEW = wx.NewId()
MENU_SQUARE = wx.NewId()
MENU_CIRCLE = wx.NewId()
OP_LIST = [_("Draw"), _("Erase"), _("Threshold")]
class TaskPanel(wx.Panel):
def __init__(self, parent):
wx.Panel.__init__(self, parent)
inner_panel = InnerTaskPanel(self)
sizer = wx.BoxSizer(wx.HORIZONTAL)
sizer.Add(inner_panel, 1, wx.EXPAND | wx.GROW | wx.BOTTOM | wx.RIGHT |
wx.LEFT, 7)
sizer.Fit(self)
self.SetSizer(sizer)
self.Update()
self.SetAutoLayout(1)
# select mask - combo
# mesh quality - combo?
# apply button
# Contour - slider
# enable / disable Fill holes
class InnerTaskPanel(wx.Panel):
def __init__(self, parent):
wx.Panel.__init__(self, parent)
default_colour = self.GetBackgroundColour()
self.SetBackgroundColour(wx.Colour(255,255,255))
self.SetAutoLayout(1)
BMP_ADD = wx.Bitmap("../icons/object_add.png", wx.BITMAP_TYPE_PNG)
#BMP_ADD.SetWidth(25)
#BMP_ADD.SetHeight(25)
# Button for creating new surface
button_new_surface = pbtn.PlateButton(self, BTN_NEW, "", BMP_ADD, style=\
pbtn.PB_STYLE_SQUARE | pbtn.PB_STYLE_DEFAULT)
self.Bind(wx.EVT_BUTTON, self.OnButton)
# Fixed hyperlink items
tooltip = wx.ToolTip(_("Create 3D surface based on a mask"))
link_new_surface = hl.HyperLinkCtrl(self, -1, _("Create new 3D surface"))
link_new_surface.SetUnderlines(False, False, False)
link_new_surface.SetColours("BLACK", "BLACK", "BLACK")
link_new_surface.SetToolTip(tooltip)
link_new_surface.AutoBrowse(False)
link_new_surface.UpdateLink()
link_new_surface.Bind(hl.EVT_HYPERLINK_LEFT, self.OnLinkNewSurface)
# Create horizontal sizers to represent lines in the panel
line_new = wx.BoxSizer(wx.HORIZONTAL)
line_new.Add(link_new_surface, 1, wx.EXPAND|wx.GROW| wx.TOP|wx.RIGHT, 4)
line_new.Add(button_new_surface, 0, wx.ALL|wx.EXPAND|wx.GROW, 0)
# Folde panel which contains surface properties and quality
fold_panel = FoldPanel(self)
fold_panel.SetBackgroundColour(default_colour)
# Button to fold to select region task
button_next = wx.Button(self, -1, _("Next step"))
if sys.platform != 'win32':
button_next.SetWindowVariant(wx.WINDOW_VARIANT_SMALL)
button_next.Bind(wx.EVT_BUTTON, self.OnButtonNextTask)
# Add line sizers into main sizer
main_sizer = wx.BoxSizer(wx.VERTICAL)
main_sizer.Add(line_new, 0,wx.GROW|wx.EXPAND|wx.LEFT|wx.RIGHT|wx.TOP, 5)
main_sizer.Add(fold_panel, 1, wx.GROW|wx.EXPAND|wx.ALL, 5)
main_sizer.Add(button_next, 0, wx.ALIGN_RIGHT|wx.RIGHT|wx.BOTTOM, 5)
main_sizer.Fit(self)
self.SetSizer(main_sizer)
self.Update()
self.SetAutoLayout(1)
self.sizer = main_sizer
def OnButton(self, evt):
id = evt.GetId()
if id == BTN_NEW:
self.OnLinkNewSurface()
def OnButtonNextTask(self, evt):
if evt:
Publisher.sendMessage('Fold export task')
evt.Skip()
def OnLinkNewSurface(self, evt=None):
#import gui.dialogs as dlg
sl = slice_.Slice()
dialog = dlg.SurfaceCreationDialog(None, -1,
_('New surface'),
mask_edited=sl.current_mask.was_edited)
try:
if dialog.ShowModal() == wx.ID_OK:
ok = 1
else:
ok = 0
except(wx._core.PyAssertionError): #TODO FIX: win64
ok = 1
if (ok):
## Retrieve information from dialog
#(mask_index, surface_name, surface_quality, fill_holes,\
#keep_largest) = dialog.GetValue()
## Retrieve information from mask
#proj = prj.Project()
#mask = proj.mask_dict[mask_index]
## Send all information so surface can be created
#surface_data = [proj.imagedata,
#mask.colour,
#mask.threshold_range,
#mask.edited_points,
#False, # overwrite
#surface_name,
#surface_quality,
#fill_holes,
#keep_largest]
surface_options = dialog.GetValue()
Publisher.sendMessage('Create surface from index', surface_options)
dialog.Destroy()
if evt:
evt.Skip()
class FoldPanel(wx.Panel):
def __init__(self, parent):
wx.Panel.__init__(self, parent, size=(50,700))
self.SetBackgroundColour(wx.Colour(0,255,0))
inner_panel = InnerFoldPanel(self)
sizer = wx.BoxSizer(wx.VERTICAL)
sizer.Add(inner_panel, 1, wx.EXPAND|wx.GROW, 2)
sizer.Fit(self)
self.SetSizer(sizer)
self.Update()
self.SetAutoLayout(1)
class InnerFoldPanel(wx.Panel):
def __init__(self, parent):
wx.Panel.__init__(self, parent)
default_colour = wx.SystemSettings_GetColour(wx.SYS_COLOUR_MENUBAR)
self.SetBackgroundColour(default_colour)
# Fold panel and its style settings
# FIXME: If we dont insert a value in size or if we set wx.DefaultSize,
# the fold_panel doesnt show. This means that, for some reason, Sizer
# is not working properly in this panel. It might be on some child or
# parent panel. Perhaps we need to insert the item into the sizer also...
# Study this.
fold_panel = fpb.FoldPanelBar(self, -1, wx.DefaultPosition,
(10, 140), 0,fpb.FPB_SINGLE_FOLD)
# Fold panel style
style = fpb.CaptionBarStyle()
style.SetCaptionStyle(fpb.CAPTIONBAR_GRADIENT_V)
style.SetFirstColour(default_colour)
style.SetSecondColour(default_colour)
# Fold 1 - Surface properties
item = fold_panel.AddFoldPanel(_("Surface properties"), collapsed=True)
fold_panel.ApplyCaptionStyle(item, style)
fold_panel.AddFoldPanelWindow(item, SurfaceProperties(item), Spacing= 0,
leftSpacing=0, rightSpacing=0)
fold_panel.Expand(fold_panel.GetFoldPanel(0))
# Fold 2 - Surface tools
item = fold_panel.AddFoldPanel(_("Advanced options"), collapsed=True)
fold_panel.ApplyCaptionStyle(item, style)
fold_panel.AddFoldPanelWindow(item, SurfaceTools(item), Spacing= 0,
leftSpacing=0, rightSpacing=0)
#fold_panel.AddFoldPanelWindow(item, QualityAdjustment(item), Spacing= 0,
# leftSpacing=0, rightSpacing=0)
#fold_panel.Expand(fold_panel.GetFoldPanel(1))
# Panel sizer to expand fold panel
sizer = wx.BoxSizer(wx.VERTICAL)
sizer.Add(fold_panel, 1, wx.GROW|wx.EXPAND)
sizer.Fit(self)
self.SetSizer(sizer)
self.Update()
self.SetAutoLayout(1)
BTN_LARGEST = wx.NewId()
BTN_SPLIT = wx.NewId()
BTN_SEEDS = wx.NewId()
class SurfaceTools(wx.Panel):
def __init__(self, parent):
wx.Panel.__init__(self, parent, size=(50,400))
default_colour = wx.SystemSettings_GetColour(wx.SYS_COLOUR_MENUBAR)
self.SetBackgroundColour(default_colour)
#self.SetBackgroundColour(wx.Colour(255,255,255))
self.SetAutoLayout(1)
# Fixed hyperlink items
tooltip = wx.ToolTip(_("Automatically select largest disconnected region and create new surface"))
link_largest = hl.HyperLinkCtrl(self, -1, _("Select largest surface"))
link_largest.SetUnderlines(False, False, False)
link_largest.SetColours("BLACK", "BLACK", "BLACK")
link_largest.SetToolTip(tooltip)
link_largest.AutoBrowse(False)
link_largest.UpdateLink()
link_largest.Bind(hl.EVT_HYPERLINK_LEFT, self.OnLinkLargest)
tooltip = wx.ToolTip(_("Automatically select disconnected regions and create a new surface per region"))
link_split_all = hl.HyperLinkCtrl(self, -1,_("Split all disconnected surfaces"))
link_split_all.SetUnderlines(False, False, False)
link_split_all.SetColours("BLACK", "BLACK", "BLACK")
link_split_all.SetToolTip(tooltip)
link_split_all.AutoBrowse(False)
link_split_all.UpdateLink()
link_split_all.Bind(hl.EVT_HYPERLINK_LEFT, self.OnLinkSplit)
tooltip = wx.ToolTip(_("Manually insert seeds of regions of interest and create a new surface"))
link_seeds = hl.HyperLinkCtrl(self,-1,_("Select regions of interest..."))
link_seeds.SetUnderlines(False, False, False)
link_seeds.SetColours("BLACK", "BLACK", "BLACK")
link_seeds.SetToolTip(tooltip)
link_seeds.AutoBrowse(False)
link_seeds.UpdateLink()
link_seeds.Bind(hl.EVT_HYPERLINK_LEFT, self.OnLinkSeed)
# Image(s) for buttons
img_largest = wx.Image("../icons/connectivity_largest.png",
wx.BITMAP_TYPE_PNG)
img_largest.Rescale(25, 25)
bmp_largest = img_largest.ConvertToBitmap()
img_split_all = wx.Image("../icons/connectivity_split_all.png",
wx.BITMAP_TYPE_PNG)
img_split_all.Rescale(25, 25)
bmp_split_all = img_split_all.ConvertToBitmap()
img_seeds = wx.Image("../icons/connectivity_manual.png",
wx.BITMAP_TYPE_PNG)
img_seeds.Rescale(25, 25)
bmp_seeds = img_seeds.ConvertToBitmap()
# Buttons related to hyperlinks
button_style = pbtn.PB_STYLE_SQUARE | pbtn.PB_STYLE_DEFAULT
button_style_plus = button_style|pbtn.PB_STYLE_TOGGLE
button_split = pbtn.PlateButton(self, BTN_SPLIT, "", bmp_split_all,
style=button_style)
button_largest = pbtn.PlateButton(self, BTN_LARGEST, "", bmp_largest,
style=button_style)
button_seeds = pbtn.PlateButton(self, BTN_SEEDS, "", bmp_seeds,
style=button_style_plus)
self.button_seeds = button_seeds
# When using PlaneButton, it is necessary to bind events from parent win
self.Bind(wx.EVT_BUTTON, self.OnButton)
# Tags and grid sizer for fixed items
flag_link = wx.EXPAND|wx.GROW|wx.LEFT|wx.TOP
flag_button = wx.EXPAND | wx.GROW
#fixed_sizer = wx.FlexGridSizer(rows=3, cols=2, hgap=2, vgap=0)
fixed_sizer = wx.FlexGridSizer(rows=3, cols=2, hgap=2, vgap=0)
fixed_sizer.AddGrowableCol(0, 1)
fixed_sizer.AddMany([(link_largest, 1, flag_link, 3),
(button_largest, 0, flag_button),
(link_seeds, 1, flag_link, 3),
(button_seeds, 0, flag_button),
(link_split_all, 1, flag_link, 3),
(button_split, 0, flag_button)])
# Add line sizers into main sizer
main_sizer = wx.BoxSizer(wx.VERTICAL)
main_sizer.Add(fixed_sizer, 0, wx.GROW|wx.EXPAND|wx.TOP, 5)
# Update main sizer and panel layout
self.SetSizer(main_sizer)
self.Update()
self.SetAutoLayout(1)
self.sizer = main_sizer
def OnLinkLargest(self, evt):
self.SelectLargest()
def OnLinkSplit(self, evt):
self.SplitSurface()
def OnLinkSeed(self, evt):
self.button_seeds.Toggle()
self.SelectSeed()
def OnButton(self, evt):
id = evt.GetId()
if id == BTN_LARGEST:
self.SelectLargest()
elif id == BTN_SPLIT:
self.SplitSurface()
else:
self.SelectSeed()
def SelectLargest(self):
Publisher.sendMessage('Create surface from largest region')
def SplitSurface(self):
Publisher.sendMessage('Split surface')
def SelectSeed(self):
if self.button_seeds.IsPressed():
self.StartSeeding()
else:
self.EndSeeding()
def StartSeeding(self):
Publisher.sendMessage('Enable style', const.VOLUME_STATE_SEED)
Publisher.sendMessage('Create surface by seeding - start')
def EndSeeding(self):
Publisher.sendMessage('Disable style', const.VOLUME_STATE_SEED)
Publisher.sendMessage('Create surface by seeding - end')
class SurfaceProperties(wx.Panel):
def __init__(self, parent):
wx.Panel.__init__(self, parent, size=(50,400))
default_colour = wx.SystemSettings_GetColour(wx.SYS_COLOUR_MENUBAR)
self.SetBackgroundColour(default_colour)
self.surface_dict = utl.TwoWaysDictionary()
## LINE 1
# Combo related to mask naem
combo_surface_name = wx.ComboBox(self, -1, "", choices=
self.surface_dict.keys() or ["", ],
style=wx.CB_DROPDOWN|wx.CB_READONLY)
combo_surface_name.SetSelection(0)
if sys.platform != 'win32':
combo_surface_name.SetWindowVariant(wx.WINDOW_VARIANT_SMALL)
combo_surface_name.Bind(wx.EVT_COMBOBOX, self.OnComboName)
self.combo_surface_name = combo_surface_name
# Mask colour
button_colour= csel.ColourSelect(self, -1,colour=(0,0,255),size=(-1,22))
button_colour.Bind(csel.EVT_COLOURSELECT, self.OnSelectColour)
self.button_colour = button_colour
# Sizer which represents the first line
line1 = wx.BoxSizer(wx.HORIZONTAL)
line1.Add(combo_surface_name, 1, wx.LEFT|wx.EXPAND|wx.GROW|wx.TOP|wx.RIGHT, 7)
line1.Add(button_colour, 0, wx.TOP|wx.RIGHT, 7)
## LINE 2
text_transparency = wx.StaticText(self, -1, _("Transparency:"))
slider_transparency = wx.Slider(self, -1, 0, MIN_TRANSPARENCY,
MAX_TRANSPARENCY,
style=wx.SL_HORIZONTAL)#|wx.SL_AUTOTICKS)
slider_transparency.SetWindowVariant(wx.WINDOW_VARIANT_SMALL)
slider_transparency.Bind(wx.EVT_SLIDER, self.OnTransparency)
self.slider_transparency = slider_transparency
## MIX LINE 2 AND 3
flag_link = wx.EXPAND|wx.GROW|wx.RIGHT
flag_slider = wx.EXPAND | wx.GROW| wx.LEFT|wx.TOP
flag_combo = wx.EXPAND | wx.GROW| wx.LEFT
fixed_sizer = wx.BoxSizer(wx.HORIZONTAL)
fixed_sizer.AddMany([ (text_transparency, 0, flag_link, 0),
(slider_transparency, 1, flag_slider,4)])
# LINE 4
#cb = wx.CheckBox(self, -1, "Fill largest surface holes")
#cb.SetValue(True)
# Add all lines into main sizer
sizer = wx.BoxSizer(wx.VERTICAL)
sizer.Add(line1, 1, wx.GROW|wx.EXPAND|wx.TOP, 10)
sizer.Add(fixed_sizer, 0,
wx.GROW|wx.EXPAND|wx.LEFT|wx.RIGHT|wx.TOP|wx.BOTTOM, 10)
#sizer.Add(cb, 0, wx.GROW|wx.EXPAND|wx.RIGHT|wx.LEFT|wx.TOP|wx.BOTTOM, 5)
sizer.Fit(self)
self.SetSizer(sizer)
self.Update()
self.SetAutoLayout(1)
self.__bind_events()
def __bind_events(self):
Publisher.subscribe(self.InsertNewSurface,
'Update surface info in GUI')
Publisher.subscribe(self.ChangeSurfaceName,
'Change surface name')
Publisher.subscribe(self.OnCloseProject, 'Close project data')
Publisher.subscribe(self.OnRemoveSurfaces, 'Remove surfaces')
def OnRemoveSurfaces(self, pubsub_evt):
list_index = pubsub_evt.data
old_dict = self.surface_dict
new_dict = utl.TwoWaysDictionary()
for index in list_index:
self.combo_surface_name.Delete(index)
for name in old_dict:
if old_dict[name] < index:
new_dict[name] = old_dict[name]
if old_dict[name] > index:
new_dict[name] = old_dict[name] -1
old_dict = new_dict
self.surface_dict = new_dict
def OnCloseProject(self, pubsub_evt):
self.CloseProject()
def CloseProject(self):
n = self.combo_surface_name.GetCount()
for i in xrange(n-1, -1, -1):
self.combo_surface_name.Delete(i)
def ChangeSurfaceName(self, pubsub_evt):
index, name = pubsub_evt.data
old_name = self.surface_dict.get_key(index)
self.surface_dict.remove(old_name)
self.surface_dict[name] = index
self.combo_surface_name.SetString(index, name)
self.combo_surface_name.Refresh()
def InsertNewSurface(self, pubsub_evt):
#not_update = len(pubsub_evt.data) == 5
index = pubsub_evt.data[0]
name = pubsub_evt.data[1]
colour = [value*255 for value in pubsub_evt.data[2]]
overwrite = name in self.surface_dict.keys()
#if index not in self.surface_dict.values():
if not overwrite or not self.surface_dict:
self.surface_dict[name] = index
index = self.combo_surface_name.Append(name)
transparency = 100*pubsub_evt.data[4]
self.button_colour.SetColour(colour)
self.slider_transparency.SetValue(transparency)
self.combo_surface_name.SetSelection(index)
Publisher.sendMessage('Update surface data', (index))
def OnComboName(self, evt):
surface_name = evt.GetString()
surface_index = evt.GetSelection()
Publisher.sendMessage('Change surface selected', surface_index)
def OnSelectColour(self, evt):
colour = [value/255.0 for value in evt.GetValue()]
Publisher.sendMessage('Set surface colour',
(self.combo_surface_name.GetSelection(),
colour))
def OnTransparency(self, evt):
transparency = evt.GetInt()/float(MAX_TRANSPARENCY)
# FIXME: In Mac OS/X, wx.Slider (wx.Python 2.8.10) has problem on the
# right-limit as reported on http://trac.wxwidgets.org/ticket/4555.
# This problem is in wx.Widgets and therefore we'll simply overcome it:
if (wx.Platform == "__WXMAC__"):
transparency = evt.GetInt()/(0.96*float(MAX_TRANSPARENCY))
Publisher.sendMessage('Set surface transparency',
(self.combo_surface_name.GetSelection(),
transparency))
class QualityAdjustment(wx.Panel):
def __init__(self, parent):
import constants as const
wx.Panel.__init__(self, parent, size=(50,240))
default_colour = wx.SystemSettings_GetColour(wx.SYS_COLOUR_MENUBAR)
self.SetBackgroundColour(default_colour)
# LINE 1
combo_quality = wx.ComboBox(self, -1, "",
choices=const.SURFACE_QUALITY.keys() or
["", ],
style=wx.CB_DROPDOWN|wx.CB_READONLY)
combo_quality.SetSelection(3)
combo_quality.SetWindowVariant(wx.WINDOW_VARIANT_SMALL)
#combo_quality.Bind(wx.EVT_COMBOBOX, self.OnComboQuality)
# LINE 2
check_decimate = wx.CheckBox(self, -1, "")
text_decimate = wx.StaticText(self, -1, _("Decimate resolution:"))
spin_decimate = wx.SpinCtrl(self, -1, "", (30, 50))
spin_decimate.SetRange(1,100)
spin_decimate.SetValue(30)
#spin_decimate.Bind(wx.EVT_TEXT, self.OnDecimate)
# LINE 3
check_smooth = wx.CheckBox(self, -1, "")
text_smooth = wx.StaticText(self, -1, _("Smooth iterations:"))
spin_smooth = wx.SpinCtrl(self, -1, "", (30, 50))
spin_smooth.SetRange(1,100)
spin_smooth.SetValue(0)
# MIXED LINE 2 AND 3
flag_link = wx.EXPAND|wx.GROW|wx.RIGHT|wx.LEFT
flag_slider = wx.EXPAND | wx.GROW| wx.LEFT|wx.TOP
flag_combo = wx.EXPAND | wx.GROW| wx.LEFT
fixed_sizer = wx.FlexGridSizer(rows=2, cols=3, hgap=2, vgap=0)
fixed_sizer.AddMany([ (check_decimate, 0, flag_combo, 2),
(text_decimate, 0, flag_slider, 7),
(spin_decimate, 1, flag_link,14),
(check_smooth, 0, flag_combo, 2),
(text_smooth, 0, flag_slider, 7),
(spin_smooth, 1, flag_link, 14)])
fixed_sizer.AddGrowableCol(2)
sizer = wx.BoxSizer(wx.VERTICAL)
sizer.Add(combo_quality, 1, wx.EXPAND|wx.GROW|wx.LEFT|wx.RIGHT|wx.TOP, 5)
sizer.Add(fixed_sizer, 0, wx.LEFT|wx.RIGHT, 5)
sizer.Fit(self)
self.SetSizer(sizer)
self.Update()
self.SetAutoLayout(1)
def OnComboQuality(self, evt):
print "TODO: Send Signal - Change surface quality: %s" % (evt.GetString())
def OnDecimate(self, evt):
print "TODO: Send Signal - Decimate: %s" % float(self.spin.GetValue())/100