utils.py
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#--------------------------------------------------------------------------
# Software: InVesalius - Software de Reconstrucao 3D de Imagens Medicas
# Copyright: (C) 2001 Centro de Pesquisas Renato Archer
# Homepage: http://www.softwarepublico.gov.br
# Contact: invesalius@cti.gov.br
# License: GNU - GPL 2 (LICENSE.txt/LICENCA.txt)
#--------------------------------------------------------------------------
# Este programa e software livre; voce pode redistribui-lo e/ou
# modifica-lo sob os termos da Licenca Publica Geral GNU, conforme
# publicada pela Free Software Foundation; de acordo com a versao 2
# da Licenca.
#
# Este programa eh distribuido na expectativa de ser util, mas SEM
# QUALQUER GARANTIA; sem mesmo a garantia implicita de
# COMERCIALIZACAO ou de ADEQUACAO A QUALQUER PROPOSITO EM
# PARTICULAR. Consulte a Licenca Publica Geral GNU para obter mais
# detalhes.
#--------------------------------------------------------------------------
import platform
import sigar
import sys
def debug(error_str):
"""
Redirects output to file, or to the terminal
This should be used in the place of "print"
"""
from session import Session
session = Session()
if session.debug:
print >> sys.stderr, error_str
def next_copy_name(original_name, names_list):
"""
Given original_name of an item and a list of existing names,
builds up the name of a copy, keeping the pattern:
original_name
original_name copy
original_name copy#1
"""
# is there only one copy, unnumbered?
if original_name.endswith(" copy"):
first_copy = original_name
last_index = -1
else:
parts = original_name.rpartition(" copy#")
# is there any copy, might be numbered?
if parts[0] and parts[-1]:
# yes, lets check if it ends with a number
if isinstance(eval(parts[-1]), int):
last_index = int(parts[-1]) - 1
first_copy="%s copy"%parts[0]
# no... well, so will build the copy name from zero
else:
last_index = -1
first_copy = "%s copy"%original_name
# apparently this isthe new copy name, check it
if not (first_copy in names_list):
return first_copy
else:
# no, apparently there are no copies, as
# separator was not found -- returned ("", " copy#", "")
last_index = -1
first_copy = "%s copy"%original_name
# apparently this isthe new copy name, check it
if not (first_copy in names_list):
return first_copy
# lets build up the new name based on last pattern value
got_new_name = False
while not got_new_name:
last_index += 1
next_copy = "%s#%d"%(first_copy, last_index+1)
if not (next_copy in names_list):
got_new_name = True
return next_copy
#http://www.garyrobinson.net/2004/03/python_singleto.html
# Gary Robinson
class Singleton(type):
def __init__(cls,name,bases,dic):
super(Singleton,cls).__init__(name,bases,dic)
cls.instance=None
def __call__(cls,*args,**kw):
if cls.instance is None:
cls.instance=super(Singleton,cls).__call__(*args,**kw)
return cls.instance
# Another possible implementation
#class Singleton(object):
# def __new__(cls, *args, **kwargs):
# if '_inst' not in vars(cls):
# cls._inst = type.__new__(cls, *args, **kwargs)
# return cls._inst
class TwoWaysDictionary(dict):
"""
Dictionary that can be searched based on a key or on a item.
The idea is to be able to search for the key given the item it maps.
"""
def __init__(self, items=[]):
dict.__init__(self, items)
def get_key(self, value):
"""
Find the key(s) as a list given a value.
"""
return [item[0] for item in self.items() if item[1] == value]
def remove(self, key):
try:
self.pop(key)
except TypeError:
debug("TwoWaysDictionary: no item")
def get_value(self, key):
"""
Find the value given a key.
"""
return self[key]
def frange(start, end=None, inc=None):
"A range function, that accepts float increments."
if end == None:
end = start + 0.0
start = 0.0
if (inc == None) or (inc == 0):
inc = 1.0
L = []
while 1:
next = start + len(L) * inc
if inc > 0 and next >= end:
break
elif inc < 0 and next <= end:
break
L.append(next)
return L
def predict_memory(nfiles, x, y, p):
"""
Predict how much memory will be used, giving the following
information:
nfiles: number of dicom files
x, y: dicom image size
p: bits allocated for each pixel sample
"""
m = nfiles * (x * y * p)
#physical_memory in Byte
physical_memory = get_physical_memory()
if (sys.platform == 'win32'):
if (platform.architecture()[0] == '32bit'):
#(314859200 = 300 MB)
#(26999999 = 25 MB)
#case occupy more than 300 MB image is reduced to 1.5,
#and 25 MB each image is resized 0.04.
if (m >= 314859200):
porcent = 1.5 + (m - 314859200) / 26999999 * 0.04
else:
return (x, y)
else: #64 bits architecture
#2147483648 byte = 2.0 GB
#4294967296 byte = 4.0 GB
if (physical_memory <= 2147483648) and (nfiles <= 1200):
porcent = 1.5 + (m - 314859200) / 26999999 * 0.04
elif(physical_memory <= 2147483648) and (nfiles > 1200):
porcent = 1.5 + (m - 314859200) / 26999999 * 0.05
elif(physical_memory > 2147483648) and \
(physical_memory <= 4294967296) and (nfiles <= 1200):
porcent = 1.5 + (m - 314859200) / 26999999 * 0.02
else:
return (x,y)
return (x/porcent, y/porcent)
elif(sys.platform == 'linux2'):
if (platform.architecture()[0] == '32bit'):
# 839000000 = 800 MB
if (m <= 839000000) and (physical_memory <= 2147483648):
return (x,y)
elif (m > 839000000) and (physical_memory <= 2147483648) and (nfiles <= 1200):
porcent = 1.5 + (m - 314859200) / 26999999 * 0.02
else:
return (x,y)
else:
if (m <= 839000000) and (physical_memory <= 2147483648):
return (x, y)
elif (m > 839000000) and (physical_memory <= 2147483648) and (nfiles <= 1200):
porcent = 1.5 + (m - 314859200) / 26999999 * 0.02
else:
return (x,y)
return (x/porcent, y/porcent)
elif(sys.platform == 'darwin'):
return (x/2,y/2)
#def convert_bytes(bytes):
# if bytes >= 1073741824:
# return str(bytes / 1024 / 1024 / 1024) + ' GB'
# elif bytes >= 1048576:
# return str(bytes / 1024 / 1024) + ' MB'
# elif bytes >= 1024:
# return str(bytes / 1024) + ' KB'
# elif bytes < 1024:
# return str(bytes) + ' bytes'
def get_physical_memory():
"""
Return physical memory in bytes
"""
sg = sigar.open()
mem = sg.mem()
sg.close()
return int(mem.total())