Software Público Brasileiro

Neuronavigation module updatings and improvements

* Revert "Revert "ENH: Update neuronavigator modules""

This reverts commit 2ecc37998e18c762b82413314fcf75d1491ca1be.

* ENH: Update corregistration comments.

* ENH: Restructuring InVesalius Navigator spatial tracker communication.

* ENH: Restructuring the spatial tracker communication.

* ENH: Updating navigation tools.

* Code refactoring for navigator development

- Delete previous git mistakes while tracking files
- Code fix to run invesalius navigator and start code refactoring

* Update navigator GUI
- Improvement on manipulation of markers creation and edition
- Buttons and panels size adjustment

* Improvement on trackers connection
- MicronTracker supports dynamic reference

* VTK6 adjustments - SetInputData
-Using SetInputData instead SetInput

* Update Create Markers and fix sphere creation

- Improvement on manipulation of markers creation and edition
- Using SetInputConnection(GetOutputPort()) instead SetInputData(GetOutput())

* GUI update and creation of fiducial markers

* Fix Fiducial Markers

* Update - Load Fiducial points using "Load Markers"

* Fix Trackers (PLH) and Navigation

* Update ComboBox and trackers connection

* Full support for Analyze, NIfTI and PAR/REC images
- Support for Analyze, NIfTI, Compressed NIfTI and PAR/REC images
- Support for Analyze limited due to lack of orientation info
- Image orientation standardized to RAS+

* ComboBox Update
- Set "Select tracker" when the tracker is not connected

* Fixed usp-navegador version
- Changed GetValue to GetValue()
- Changed SetInputData to SetInput
- Changed SetInputConnection to SetInputData

* Manually merged rmatsuda master_merge branch to usp-navegador
- Improved navigation GUI
- Improved navigation control of spatial trackers
- Added management of makers creation
- Added dialogs for better neuronavigation control

* Added TMS trigger and enhanced tracker device control
- Serial communication to detect TMS trigger
- Added MicronTracker calibration and marker files
- Enhanced tracker manipulation

* Navigation cleaning and improvements in viewer volume
- Cleaned unecessary navigation functions
- Optimized volume camera and ball reference positions
- Enhanced markers manipulation
- Removed blank lines

* Improved task_navigator GUI
- Better code using GridBagSizer
- Removed useless code

* Improvement in coordinates handling for neuronavigation

* Significant refactor of navigation pipeline
- Improvement in navigation panel controls
- Refactoring of volume and slice updates
- Improvement in communication with tracking devices
- Refactoring of entire navigation pipeline

* Improved colour and size of navigation markers

* Added trigger and volume camera controls
- Reformulated markers creation
- Created control of volume camera
- Control for external trigger marker creation

* Minor code adjustments

* GUI improvements

* Minor code optimization
- Improved load markers