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Commit 3368fa085e246376303ec5dab0dc013fc6330e47

Authored by Thiago Franco de Moraes
1 parent 914780e9
Exists in master and in 56 other branches 3d_inter_style, MIPs, brush_pix, canvas_reeng, canvas_text, casmoothing_cython, clean, command-line, cython_threshold, debian_cython, editor_improvements, ff_mask, ff_mask_improv, ffill_gui, ffill_segmentation, fill_holes_auto, fixes_pre_beta5, get_pixel, import_mesh, inv3.0.1, mactoolbar, mactoolbar_bkp, manual_v3.1, mask_boolean_op, mask_boolean_op_bkp, mask_copy, mask_greatest_component, measure_canvas, measure_improvements, measure_placement_test, phoenix, region_growing_confidence, remove_local_wxpython, rmatsuda-fix_ref_MTC, rmatsuda-fix_remove_marker_bug, rmatsuda-trigger_bug_fix, rotvol, segmentation_menu, select_part, smoothing_bin, smoothing_bin_pll, surface_area, user_guide_en, usp-navegador, vti, vtk6, watershed, watershed_improvements, watershed_improvements_bkp, watershed_merge, workdir, wx2.9_mac, wxgtk3, wxgtk3_b5, wxgtk3_bkp, xmartlabs-command-line

Border size independent in each orientation

Showing 2 changed files with 18 additions and 14 deletions   Show diff stats
invesalius/data/slice_.py
  Diff comments   View file @3368fa0
@@ -438,14 +438,16 @@ class Slice(object): @@ -438,14 +438,16 @@ class Slice(object):
438 self.buffer_slices[orientation].discard_vtk_mask() 438 self.buffer_slices[orientation].discard_vtk_mask()
439 439
440 440
441 - def GetSlices(self, orientation, slice_number, number_slices, inverted=False): 441 + def GetSlices(self, orientation, slice_number, number_slices,
  442 + inverted=False, border_size=1.0):
442 if self.buffer_slices[orientation].index == slice_number and \ 443 if self.buffer_slices[orientation].index == slice_number and \
443 self._type_projection == const.PROJECTION_NORMAL: 444 self._type_projection == const.PROJECTION_NORMAL:
444 if self.buffer_slices[orientation].vtk_image: 445 if self.buffer_slices[orientation].vtk_image:
445 image = self.buffer_slices[orientation].vtk_image 446 image = self.buffer_slices[orientation].vtk_image
446 else: 447 else:
447 n_image = self.get_image_slice(orientation, slice_number, 448 n_image = self.get_image_slice(orientation, slice_number,
448 - number_slices, inverted) 449 + number_slices, inverted,
  450 + border_size)
449 image = converters.to_vtk(n_image, self.spacing, slice_number, orientation) 451 image = converters.to_vtk(n_image, self.spacing, slice_number, orientation)
450 ww_wl_image = self.do_ww_wl(image) 452 ww_wl_image = self.do_ww_wl(image)
451 image = self.do_colour_image(ww_wl_image) 453 image = self.do_colour_image(ww_wl_image)
@@ -466,7 +468,7 @@ class Slice(object): @@ -466,7 +468,7 @@ class Slice(object):
466 self.buffer_slices[orientation].vtk_image = image 468 self.buffer_slices[orientation].vtk_image = image
467 else: 469 else:
468 n_image = self.get_image_slice(orientation, slice_number, 470 n_image = self.get_image_slice(orientation, slice_number,
469 - number_slices, inverted) 471 + number_slices, inverted, border_size)
470 image = converters.to_vtk(n_image, self.spacing, slice_number, orientation) 472 image = converters.to_vtk(n_image, self.spacing, slice_number, orientation)
471 ww_wl_image = self.do_ww_wl(image) 473 ww_wl_image = self.do_ww_wl(image)
472 image = self.do_colour_image(ww_wl_image) 474 image = self.do_colour_image(ww_wl_image)
@@ -489,7 +491,8 @@ class Slice(object): @@ -489,7 +491,8 @@ class Slice(object):
489 491
490 return final_image 492 return final_image
491 493
492 - def get_image_slice(self, orientation, slice_number, number_slices=1, inverted=False): 494 + def get_image_slice(self, orientation, slice_number, number_slices=1,
  495 + inverted=False, border_size=1.0):
493 if self.buffer_slices[orientation].index == slice_number \ 496 if self.buffer_slices[orientation].index == slice_number \
494 and self.buffer_slices[orientation].image is not None: 497 and self.buffer_slices[orientation].image is not None:
495 n_image = self.buffer_slices[orientation].image 498 n_image = self.buffer_slices[orientation].image
@@ -524,19 +527,19 @@ class Slice(object): @@ -524,19 +527,19 @@ class Slice(object):
524 n_image = numpy.empty(shape=(tmp_array.shape[1], 527 n_image = numpy.empty(shape=(tmp_array.shape[1],
525 tmp_array.shape[2]), 528 tmp_array.shape[2]),
526 dtype=tmp_array.dtype) 529 dtype=tmp_array.dtype)
527 - mips.fast_countour_mip(tmp_array, self.n_border, 0, self.window_level, 530 + mips.fast_countour_mip(tmp_array, border_size, 0, self.window_level,
528 self.window_level, 0, n_image) 531 self.window_level, 0, n_image)
529 elif self._type_projection == const.PROJECTION_CONTOUR_LMIP: 532 elif self._type_projection == const.PROJECTION_CONTOUR_LMIP:
530 n_image = numpy.empty(shape=(tmp_array.shape[1], 533 n_image = numpy.empty(shape=(tmp_array.shape[1],
531 tmp_array.shape[2]), 534 tmp_array.shape[2]),
532 dtype=tmp_array.dtype) 535 dtype=tmp_array.dtype)
533 - mips.fast_countour_mip(tmp_array, self.n_border, 0, self.window_level, 536 + mips.fast_countour_mip(tmp_array, border_size, 0, self.window_level,
534 self.window_level, 1, n_image) 537 self.window_level, 1, n_image)
535 elif self._type_projection == const.PROJECTION_CONTOUR_MIDA: 538 elif self._type_projection == const.PROJECTION_CONTOUR_MIDA:
536 n_image = numpy.empty(shape=(tmp_array.shape[1], 539 n_image = numpy.empty(shape=(tmp_array.shape[1],
537 tmp_array.shape[2]), 540 tmp_array.shape[2]),
538 dtype=tmp_array.dtype) 541 dtype=tmp_array.dtype)
539 - mips.fast_countour_mip(tmp_array, self.n_border, 0, self.window_level, 542 + mips.fast_countour_mip(tmp_array, border_size, 0, self.window_level,
540 self.window_level, 2, n_image) 543 self.window_level, 2, n_image)
541 else: 544 else:
542 n_image = numpy.array(self.matrix[slice_number]) 545 n_image = numpy.array(self.matrix[slice_number])
@@ -572,19 +575,19 @@ class Slice(object): @@ -572,19 +575,19 @@ class Slice(object):
572 n_image = numpy.empty(shape=(tmp_array.shape[0], 575 n_image = numpy.empty(shape=(tmp_array.shape[0],
573 tmp_array.shape[2]), 576 tmp_array.shape[2]),
574 dtype=tmp_array.dtype) 577 dtype=tmp_array.dtype)
575 - mips.fast_countour_mip(tmp_array, self.n_border, 1, self.window_level, 578 + mips.fast_countour_mip(tmp_array, border_size, 1, self.window_level,
576 self.window_level, 0, n_image) 579 self.window_level, 0, n_image)
577 elif self._type_projection == const.PROJECTION_CONTOUR_LMIP: 580 elif self._type_projection == const.PROJECTION_CONTOUR_LMIP:
578 n_image = numpy.empty(shape=(tmp_array.shape[0], 581 n_image = numpy.empty(shape=(tmp_array.shape[0],
579 tmp_array.shape[2]), 582 tmp_array.shape[2]),
580 dtype=tmp_array.dtype) 583 dtype=tmp_array.dtype)
581 - mips.fast_countour_mip(tmp_array, self.n_border, 1, self.window_level, 584 + mips.fast_countour_mip(tmp_array, border_size, 1, self.window_level,
582 self.window_level, 1, n_image) 585 self.window_level, 1, n_image)
583 elif self._type_projection == const.PROJECTION_CONTOUR_MIDA: 586 elif self._type_projection == const.PROJECTION_CONTOUR_MIDA:
584 n_image = numpy.empty(shape=(tmp_array.shape[0], 587 n_image = numpy.empty(shape=(tmp_array.shape[0],
585 tmp_array.shape[2]), 588 tmp_array.shape[2]),
586 dtype=tmp_array.dtype) 589 dtype=tmp_array.dtype)
587 - mips.fast_countour_mip(tmp_array, self.n_border, 1, self.window_level, 590 + mips.fast_countour_mip(tmp_array, border_size, 1, self.window_level,
588 self.window_level, 2, n_image) 591 self.window_level, 2, n_image)
589 else: 592 else:
590 n_image = numpy.array(self.matrix[..., slice_number, ...]) 593 n_image = numpy.array(self.matrix[..., slice_number, ...])
@@ -617,19 +620,19 @@ class Slice(object): @@ -617,19 +620,19 @@ class Slice(object):
617 n_image = numpy.empty(shape=(tmp_array.shape[0], 620 n_image = numpy.empty(shape=(tmp_array.shape[0],
618 tmp_array.shape[1]), 621 tmp_array.shape[1]),
619 dtype=tmp_array.dtype) 622 dtype=tmp_array.dtype)
620 - mips.fast_countour_mip(tmp_array, self.n_border, 2, self.window_level, 623 + mips.fast_countour_mip(tmp_array, border_size, 2, self.window_level,
621 self.window_level, 0, n_image) 624 self.window_level, 0, n_image)
622 elif self._type_projection == const.PROJECTION_CONTOUR_LMIP: 625 elif self._type_projection == const.PROJECTION_CONTOUR_LMIP:
623 n_image = numpy.empty(shape=(tmp_array.shape[0], 626 n_image = numpy.empty(shape=(tmp_array.shape[0],
624 tmp_array.shape[1]), 627 tmp_array.shape[1]),
625 dtype=tmp_array.dtype) 628 dtype=tmp_array.dtype)
626 - mips.fast_countour_mip(tmp_array, self.n_border, 2, self.window_level, 629 + mips.fast_countour_mip(tmp_array, border_size, 2, self.window_level,
627 self.window_level, 1, n_image) 630 self.window_level, 1, n_image)
628 elif self._type_projection == const.PROJECTION_CONTOUR_MIDA: 631 elif self._type_projection == const.PROJECTION_CONTOUR_MIDA:
629 n_image = numpy.empty(shape=(tmp_array.shape[0], 632 n_image = numpy.empty(shape=(tmp_array.shape[0],
630 tmp_array.shape[1]), 633 tmp_array.shape[1]),
631 dtype=tmp_array.dtype) 634 dtype=tmp_array.dtype)
632 - mips.fast_countour_mip(tmp_array, self.n_border, 2, self.window_level, 635 + mips.fast_countour_mip(tmp_array, border_size, 2, self.window_level,
633 self.window_level, 2, n_image) 636 self.window_level, 2, n_image)
634 else: 637 else:
635 n_image = numpy.array(self.matrix[..., ..., slice_number]) 638 n_image = numpy.array(self.matrix[..., ..., slice_number])
invesalius/data/viewer_slice.py
  Diff comments   View file @3368fa0
@@ -1233,8 +1233,9 @@ class Viewer(wx.Panel): @@ -1233,8 +1233,9 @@ class Viewer(wx.Panel):
1233 1233
1234 def set_slice_number(self, index): 1234 def set_slice_number(self, index):
1235 inverted = self.mip_ctrls.inverted.GetValue() 1235 inverted = self.mip_ctrls.inverted.GetValue()
  1236 + border_size = self.mip_ctrls.border_spin.GetValue()
1236 image = self.slice_.GetSlices(self.orientation, index, 1237 image = self.slice_.GetSlices(self.orientation, index,
1237 - self.number_slices, inverted) 1238 + self.number_slices, inverted, border_size)
1238 self.slice_data.actor.SetInput(image) 1239 self.slice_data.actor.SetInput(image)
1239 for actor in self.actors_by_slice_number.get(self.slice_data.number, []): 1240 for actor in self.actors_by_slice_number.get(self.slice_data.number, []):
1240 self.slice_data.renderer.RemoveActor(actor) 1241 self.slice_data.renderer.RemoveActor(actor)