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Commit 6dbca98b38feba54921fe2a15d1f25498b63e6bc

Authored by Paulo Henrique Junqueira Amorim
1 parent 6ca69379
Exists in master and in 67 other branches 3d_inter_style, MIPs, beta3, beta4, brush_pix, canvas_reeng, canvas_text, casmoothing_cython, clean, command-line, cython_threshold, debian_cython, editor_improvements, encoding, ff_mask, ff_mask_improv, ffill_gui, ffill_segmentation, fill_holes_auto, fixes_pre_beta5, floodfill, get_pixel, import_mesh, interactor_style, inv3.0.1, mactoolbar, mactoolbar_bkp, manual_v3.1, mask_boolean_op, mask_boolean_op_bkp, mask_copy, mask_greatest_component, measure, measure_canvas, measure_improvements, measure_placement_test, measure_spacing, orientation, phoenix, region_growing_confidence, remote, remove_local_wxpython, rmatsuda-fix_ref_MTC, rmatsuda-fix_remove_marker_bug, rmatsuda-trigger_bug_fix, rotvol, segmentation_menu, select_part, smoothing_bin, smoothing_bin_pll, surface_area, threshold_history, user_guide_en, usp-navegador, vti, vtk6, watershed, watershed_improvements, watershed_improvements_bkp, watershed_merge, workdir, wwwlgui, wx2.9_mac, wxgtk3, wxgtk3_b5, wxgtk3_bkp, xmartlabs-command-line

FIX: Fixed problem change plane slices in volume view

Showing 3 changed files with 87 additions and 140 deletions   Show diff stats
invesalius/data/slice_.py
  Diff comments   View file @6dbca98
... ... @@ -114,6 +114,7 @@ class Slice(object):
114 114 'Change colour table from background image')
115 115  
116 116 ps.Publisher().subscribe(self.InputImageWidget, 'Input Image in the widget')
  117 +
117 118 ps.Publisher().subscribe(self.OnExportMask,'Export mask to file')
118 119  
119 120 ps.Publisher().subscribe(self.OnCloseProject, 'Close project data')
... ... @@ -123,7 +124,8 @@ class Slice(object):
123 124  
124 125 ps.Publisher().subscribe(self.OnRemoveMasks, 'Remove masks')
125 126 ps.Publisher().subscribe(self.OnDuplicateMasks, 'Duplicate masks')
126   -
  127 + ps.Publisher().subscribe(self.UpdateSlice3D,'Update slice 3D')
  128 +
127 129 def GetMaxSliceNumber(self, orientation):
128 130 shape = self.matrix.shape
129 131  
... ... @@ -661,17 +663,41 @@ class Slice(object):
661 663  
662 664  
663 665 def InputImageWidget(self, pubsub_evt):
664   - #widget = pubsub_evt.data
665   -
666   - #flip = vtk.vtkImageFlip()
667   - #flip.SetInput(self.window_level.GetOutput())
668   - #flip.SetFilteredAxis(1)
669   - #flip.FlipAboutOriginOn()
670   - #flip.Update()
671   -
672   - #widget.SetInput(flip.GetOutput())
673   - pass
  666 + widget, orientation = pubsub_evt.data
674 667  
  668 + original_orientation = Project().original_orientation
  669 +
  670 + img = self.buffer_slices[orientation].vtk_image
  671 +
  672 + cast = vtk.vtkImageCast()
  673 + cast.SetInput(img)
  674 + cast.SetOutputScalarTypeToDouble()
  675 + cast.ClampOverflowOn()
  676 + cast.Update()
  677 +
  678 + flip = vtk.vtkImageFlip()
  679 + flip.SetInput(cast.GetOutput())
  680 + flip.SetFilteredAxis(1)
  681 + flip.FlipAboutOriginOn()
  682 + flip.Update()
  683 + widget.SetInput(flip.GetOutput())
  684 +
  685 + def UpdateSlice3D(self, pubsub_evt):
  686 + widget, orientation = pubsub_evt.data
  687 + img = self.buffer_slices[orientation].vtk_image
  688 +
  689 + cast = vtk.vtkImageCast()
  690 + cast.SetInput(img)
  691 + cast.SetOutputScalarTypeToDouble()
  692 + cast.ClampOverflowOn()
  693 + cast.Update()
  694 +
  695 + flip = vtk.vtkImageFlip()
  696 + flip.SetInput(cast.GetOutput())
  697 + flip.SetFilteredAxis(1)
  698 + flip.FlipAboutOriginOn()
  699 + flip.Update()
  700 + widget.SetInput(flip.GetOutput())
675 701  
676 702 def CreateMask(self, imagedata=None, name=None, colour=None,
677 703 opacity=None, threshold_range=None,
... ...
invesalius/data/viewer_slice.py
  Diff comments   View file @6dbca98
... ... @@ -821,6 +821,7 @@ class Viewer(wx.Panel):
821 821 ps.Publisher().subscribe(self.RemoveActors, ('Remove actors', ORIENTATIONS[self.orientation]))
822 822  
823 823 ps.Publisher().subscribe(self.ReloadActualSlice, 'Reload actual slice')
  824 +
824 825  
825 826 def SetDefaultCursor(self, pusub_evt):
826 827 self.interactor.SetCursor(wx.StockCursor(wx.CURSOR_DEFAULT))
... ... @@ -1149,22 +1150,22 @@ class Viewer(wx.Panel):
1149 1150 def UpdateSlice3D(self, pos):
1150 1151 original_orientation = project.Project().original_orientation
1151 1152 pos = self.scroll.GetThumbPosition()
1152   - if (self.orientation == "CORONAL") and \
1153   - (original_orientation == const.AXIAL):
1154   - pos = abs(self.scroll.GetRange() - pos)
1155   - elif(self.orientation == "AXIAL") and \
1156   - (original_orientation == const.CORONAL):
1157   - pos = abs(self.scroll.GetRange() - pos)
1158   - elif(self.orientation == "AXIAL") and \
1159   - (original_orientation == const.SAGITAL):
1160   - pos = abs(self.scroll.GetRange() - pos)
  1153 + #if (self.orientation == "CORONAL") and \
  1154 + # (original_orientation == const.AXIAL):
  1155 + # pos = abs(self.scroll.GetRange() - pos)
  1156 + #elif(self.orientation == "AXIAL") and \
  1157 + # (original_orientation == const.CORONAL):
  1158 + # pos = abs(self.scroll.GetRange() - pos)
  1159 + #elif(self.orientation == "AXIAL") and \
  1160 + # (original_orientation == const.SAGITAL):
  1161 + # pos = abs(self.scroll.GetRange() - pos)
1161 1162 ps.Publisher().sendMessage('Change slice from slice plane',\
1162 1163 (self.orientation, pos))
1163 1164  
1164 1165 def OnScrollBar(self, evt=None):
1165   - pos = self.scroll.GetThumbPosition()
  1166 + pos = self.scroll.GetThumbPosition()
1166 1167 self.set_slice_number(pos)
1167   -
  1168 + self.UpdateSlice3D(pos)
1168 1169 if self.state == const.SLICE_STATE_CROSS:
1169 1170 # Update other slice's cross according to the new focal point from
1170 1171 # the actual orientation.
... ... @@ -1172,12 +1173,13 @@ class Viewer(wx.Panel):
1172 1173 ps.Publisher().sendMessage('Update cross position', focal_point)
1173 1174 ps.Publisher().sendMessage('Update slice viewer')
1174 1175 else:
1175   - self.interactor.Render()
  1176 + self.interactor.Render()
1176 1177 if evt:
1177 1178 evt.Skip()
1178 1179  
1179 1180 def OnScrollBarRelease(self, evt):
1180   - #self.UpdateSlice3D(self.pos)
  1181 + pos = self.scroll.GetThumbPosition()
  1182 + #self.UpdateSlice3D(pos)
1181 1183 evt.Skip()
1182 1184  
1183 1185 def OnKeyDown(self, evt=None, obj=None):
... ...
invesalius/data/viewer_volume.py
  Diff comments   View file @6dbca98
... ... @@ -801,120 +801,69 @@ class SlicePlane:
801 801 self.original_orientation = project.original_orientation
802 802 self.Create()
803 803 self.__bind_evt()
804   - self.__bind_vtk_evt()
805 804  
806 805 def __bind_evt(self):
807 806 ps.Publisher().subscribe(self.Enable, 'Enable plane')
808 807 ps.Publisher().subscribe(self.Disable, 'Disable plane')
809 808 ps.Publisher().subscribe(self.ChangeSlice, 'Change slice from slice plane')
810 809  
811   - def __bind_vtk_evt(self):
812   - self.plane_x.AddObserver("InteractionEvent", self.PlaneEvent)
813   - self.plane_y.AddObserver("InteractionEvent", self.PlaneEvent)
814   - self.plane_z.AddObserver("InteractionEvent", self.PlaneEvent)
815   -
816   - def PlaneEvent(self, obj, evt):
817   - number = obj.GetSliceIndex()
818   - plane_axis = obj.GetPlaneOrientation()
819   - if (self.original_orientation == const.AXIAL):
820   - if (plane_axis == 0):
821   - orientation = "SAGITAL"
822   - elif(plane_axis == 1):
823   - orientation = "CORONAL"
824   - dimen = obj.GetInput().GetDimensions()
825   - number = abs(dimen[0] - (number + 1))
826   - else:
827   - orientation = "AXIAL"
828   -
829   - elif(self.original_orientation == const.SAGITAL):
830   - if (plane_axis == 0):
831   - orientation = "CORONAL"
832   - elif(plane_axis == 1):
833   - orientation = "AXIAL"
834   - dimen = obj.GetInput().GetDimensions()
835   - number = abs(dimen[0] - (number + 1))
836   - else:
837   - orientation = "SAGITAL"
838   - else:
839   - if (plane_axis == 0):
840   - orientation = "SAGITAL"
841   - elif(plane_axis == 1):
842   - orientation = "AXIAL"
843   - dimen = obj.GetInput().GetDimensions()
844   - number = abs(dimen[0] - (number + 1))
845   - else:
846   - orientation = "CORONAL"
847   -
848   - if (obj.GetSlicePosition() != 0.0):
849   - ps.Publisher().sendMessage(('Set scroll position', \
850   - orientation), number)
851   -
852 810 def Create(self):
853 811 plane_x = self.plane_x = vtk.vtkImagePlaneWidget()
854   - plane_x.DisplayTextOff()
855   - ps.Publisher().sendMessage('Input Image in the widget', plane_x)
  812 + plane_x.InteractionOff()
  813 + ps.Publisher().sendMessage('Input Image in the widget',
  814 + (plane_x, 'SAGITAL'))
856 815 plane_x.SetPlaneOrientationToXAxes()
857 816 plane_x.TextureVisibilityOn()
858   - plane_x.SetLeftButtonAction(1)
  817 + plane_x.SetLeftButtonAction(0)
859 818 plane_x.SetRightButtonAction(0)
860   - prop1 = plane_x.GetPlaneProperty()
861   - prop1.SetColor(0, 0, 1)
  819 + plane_x.SetMiddleButtonAction(0)
862 820 cursor_property = plane_x.GetCursorProperty()
863 821 cursor_property.SetOpacity(0)
864 822  
865 823 plane_y = self.plane_y = vtk.vtkImagePlaneWidget()
866 824 plane_y.DisplayTextOff()
867   - ps.Publisher().sendMessage('Input Image in the widget', plane_y)
  825 + ps.Publisher().sendMessage('Input Image in the widget',
  826 + (plane_y, 'CORONAL'))
868 827 plane_y.SetPlaneOrientationToYAxes()
869 828 plane_y.TextureVisibilityOn()
870   - plane_y.SetLeftButtonAction(1)
  829 + plane_y.SetLeftButtonAction(0)
871 830 plane_y.SetRightButtonAction(0)
  831 + plane_y.SetMiddleButtonAction(0)
872 832 prop1 = plane_y.GetPlaneProperty()
873   - prop1.SetColor(0, 1, 0)
874 833 cursor_property = plane_y.GetCursorProperty()
875 834 cursor_property.SetOpacity(0)
876 835  
877 836 plane_z = self.plane_z = vtk.vtkImagePlaneWidget()
878   - plane_z.DisplayTextOff()
879   - ps.Publisher().sendMessage('Input Image in the widget', plane_z)
  837 + plane_z.InteractionOff()
  838 + ps.Publisher().sendMessage('Input Image in the widget',
  839 + (plane_z, 'AXIAL'))
880 840 plane_z.SetPlaneOrientationToZAxes()
881 841 plane_z.TextureVisibilityOn()
882   - plane_z.SetLeftButtonAction(1)
  842 + plane_z.SetLeftButtonAction(0)
883 843 plane_z.SetRightButtonAction(0)
884   - prop1 = plane_z.GetPlaneProperty()
885   - prop1.SetColor(1, 0, 0)
  844 + plane_z.SetMiddleButtonAction(0)
  845 +
886 846 cursor_property = plane_z.GetCursorProperty()
887 847 cursor_property.SetOpacity(0)
888 848  
889   - if(self.original_orientation == const.AXIAL):
890   - prop3 = plane_z.GetPlaneProperty()
891   - prop3.SetColor(1, 0, 0)
892   -
893   - prop1 = plane_x.GetPlaneProperty()
894   - prop1.SetColor(0, 0, 1)
895   -
896   - prop2 = plane_y.GetPlaneProperty()
897   - prop2.SetColor(0, 1, 0)
898   -
899   - elif(self.original_orientation == const.SAGITAL):
900   - prop3 = plane_y.GetPlaneProperty()
901   - prop3.SetColor(1, 0, 0)
902 849  
903   - prop1 = plane_z.GetPlaneProperty()
904   - prop1.SetColor(0, 0, 1)
905   -
906   - prop2 = plane_x.GetPlaneProperty()
907   - prop2.SetColor(0, 1, 0)
908   -
909   - else:
910   - prop3 = plane_y.GetPlaneProperty()
911   - prop3.SetColor(1, 0, 0)
  850 + prop3 = plane_z.GetPlaneProperty()
  851 + prop3.SetColor(1, 0, 0)
  852 +
  853 + selected_prop3 = plane_z.GetSelectedPlaneProperty()
  854 + selected_prop3.SetColor(1,0,0)
  855 +
  856 + prop1 = plane_x.GetPlaneProperty()
  857 + prop1.SetColor(0, 0, 1)
912 858  
913   - prop1 = plane_x.GetPlaneProperty()
914   - prop1.SetColor(0, 0, 1)
  859 + selected_prop1 = plane_x.GetSelectedPlaneProperty()
  860 + selected_prop1.SetColor(0, 0, 1)
  861 +
  862 + prop2 = plane_y.GetPlaneProperty()
  863 + prop2.SetColor(0, 1, 0)
915 864  
916   - prop2 = plane_z.GetPlaneProperty()
917   - prop2.SetColor(0, 1, 0)
  865 + selected_prop2 = plane_y.GetSelectedPlaneProperty()
  866 + selected_prop2.SetColor(0, 1, 0)
918 867  
919 868 ps.Publisher().sendMessage('Set Widget Interactor', plane_x)
920 869 ps.Publisher().sendMessage('Set Widget Interactor', plane_y)
... ... @@ -999,42 +948,12 @@ class SlicePlane:
999 948 def ChangeSlice(self, pubsub_evt = None):
1000 949 orientation, number = pubsub_evt.data
1001 950  
1002   - if (self.original_orientation == const.AXIAL):
1003   - if (orientation == "CORONAL"):
1004   - self.SetSliceNumber(number, "Y")
1005   - elif(orientation == "SAGITAL"):
1006   - self.SetSliceNumber(number, "X")
1007   - else:
1008   - self.SetSliceNumber(number, "Z")
1009   -
1010   - elif(self.original_orientation == const.SAGITAL):
1011   - if (orientation == "CORONAL"):
1012   - self.SetSliceNumber(number, "X")
1013   - elif(orientation == "SAGITAL"):
1014   - self.SetSliceNumber(number, "Z")
1015   - else:
1016   - self.SetSliceNumber(number, "Y")
1017   -
1018   - else:
1019   - if (orientation == "CORONAL"):
1020   - self.SetSliceNumber(number, "Z")
1021   - elif(orientation == "SAGITAL"):
1022   - self.SetSliceNumber(number, "X")
1023   - else:
1024   - self.SetSliceNumber(number, "Y")
1025   -
1026   - self.Render()
1027   -
1028   - def SetSliceNumber(self, number, axis):
1029   - if (axis == "X"):
1030   - self.plane_x.SetPlaneOrientationToXAxes()
1031   - self.plane_x.SetSliceIndex(number)
1032   - elif(axis == "Y"):
1033   - self.plane_y.SetPlaneOrientationToYAxes()
1034   - self.plane_y.SetSliceIndex(number)
  951 + if (orientation == "CORONAL"):
  952 + ps.Publisher().sendMessage('Update slice 3D', (self.plane_y,orientation))
  953 + elif(orientation == "SAGITAL"):
  954 + ps.Publisher().sendMessage('Update slice 3D', (self.plane_x,orientation))
1035 955 else:
1036   - self.plane_z.SetPlaneOrientationToZAxes()
1037   - self.plane_z.SetSliceIndex(number)
  956 + ps.Publisher().sendMessage('Update slice 3D', (self.plane_z,orientation))
1038 957  
1039 958 def DeletePlanes(self):
1040 959 del self.plane_x
... ...