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Commit 9cf1b5c4cce49cb82a38f86a57ce405066686edc

Authored by tfmoraes
1 parent a5da43e3
Exists in master and in 68 other branches 3d_inter_style, MIPs, beta3, beta4, brush_pix, canvas_reeng, canvas_text, casmoothing_cython, clean, command-line, cython_threshold, debian_cython, editor_improvements, encoding, ff_mask, ff_mask_improv, ffill_gui, ffill_segmentation, fill_holes_auto, fixes_pre_beta5, floodfill, get_pixel, import_mesh, interactor_style, inv3.0.1, invesalius-libift, mactoolbar, mactoolbar_bkp, manual_v3.1, mask_boolean_op, mask_boolean_op_bkp, mask_copy, mask_greatest_component, measure, measure_canvas, measure_improvements, measure_placement_test, measure_spacing, orientation, phoenix, region_growing_confidence, remote, remove_local_wxpython, rmatsuda-fix_ref_MTC, rmatsuda-fix_remove_marker_bug, rmatsuda-trigger_bug_fix, rotvol, segmentation_menu, select_part, smoothing_bin, smoothing_bin_pll, surface_area, threshold_history, user_guide_en, usp-navegador, vti, vtk6, watershed, watershed_improvements, watershed_improvements_bkp, watershed_merge, workdir, wwwlgui, wx2.9_mac, wxgtk3, wxgtk3_b5, wxgtk3_bkp, xmartlabs-command-line

ENH: Removing duplicated dicom reading in preview

Showing 2 changed files with 20 additions and 10 deletions   Show diff stats
invesalius/gui/dicom_preview_panel.py
  Diff comments   View file @9cf1b5c
... ... @@ -202,9 +202,9 @@ class SingleImagePreview(wx.Panel):
202 202 self.text_acquisition.SetValue(value)
203 203  
204 204 # READ FILE
205   - filename = dicom.image.file
206   - reader = vtkgdcm.vtkGDCMImageReader()
207   - reader.SetFileName(filename)
  205 + #filename = dicom.image.file
  206 + #reader = vtkgdcm.vtkGDCMImageReader()
  207 + #reader.SetFileName(filename)
208 208  
209 209 # ADJUST CONTRAST
210 210 window_level = dicom.image.level
... ... @@ -214,7 +214,7 @@ class SingleImagePreview(wx.Panel):
214 214 print window_level
215 215 print window_width
216 216 colorer = vtk.vtkImageMapToWindowLevelColors()
217   - colorer.SetInput(reader.GetOutput())
  217 + colorer.SetInput(dicom.image.imagedata)
218 218 colorer.SetWindow(float(window_width))
219 219 colorer.SetLevel(float(window_level))
220 220  
... ... @@ -223,6 +223,9 @@ class SingleImagePreview(wx.Panel):
223 223 self.renderer.ResetCamera()
224 224 self.interactor.Render()
225 225  
  226 + def __del__(self):
  227 + print "---------> morri"
  228 +
226 229  
227 230  
228 231 myEVT_SELECT = wx.NewEventType()
... ... @@ -412,9 +415,11 @@ class Preview(wx.Panel):
412 415  
413 416 self.ID = image_file[5]
414 417  
415   - image_reader = vtkgdcm.vtkGDCMImageReader()
416   - image_reader.SetFileName(image_file[0])
417   - image = image_reader.GetOutput()
  418 + #image_reader = vtkgdcm.vtkGDCMImageReader()
  419 + #image_reader.SetFileName(image_file[0])
  420 + #image = image_reader.GetOutput()
  421 +
  422 + image = image_file[0]
418 423  
419 424 scale = image.GetScalarRange()
420 425  
... ... @@ -595,7 +600,7 @@ class DicomPreviewSeries(wx.Panel):
595 600 self.group_list = group_list
596 601 n = 0
597 602 for group in group_list:
598   - info = (group.dicom.image.file,
  603 + info = (group.dicom.image.imagedata,
599 604 float(group.dicom.image.window),
600 605 float(group.dicom.image.level),
601 606 group.title,
... ... @@ -699,6 +704,7 @@ class DicomPreview(wx.Panel):
699 704 self.Bind(wx.EVT_SCROLL, self.OnScroll)
700 705  
701 706 def SetDicomDirectory(self, directory):
  707 + print "Setting Dicom Directory", directory
702 708 self.directory = directory
703 709 self.series = dicom_reader.GetSeries(directory)[0]
704 710  
... ... @@ -715,7 +721,7 @@ class DicomPreview(wx.Panel):
715 721 dicom_files = group.GetHandSortedList()
716 722 n = 0
717 723 for dicom in dicom_files:
718   - info = (dicom.image.file,
  724 + info = (dicom.image.imagedata,
719 725 dicom.image.window,
720 726 dicom.image.level,
721 727 "Image %d" % (dicom.image.number),
... ... @@ -740,7 +746,7 @@ class DicomPreview(wx.Panel):
740 746 dicom_files = group.GetHandSortedList()
741 747 n = 0
742 748 for dicom in dicom_files:
743   - info = (dicom.image.file,
  749 + info = (dicom.image.imagedata,
744 750 dicom.image.window,
745 751 dicom.image.level,
746 752 "Image %d" % (dicom.image.number),
... ...
invesalius/reader/dicom.py
  Diff comments   View file @9cf1b5c
... ... @@ -207,6 +207,9 @@ class Parser():
207 207  
208 208 return False
209 209  
  210 + def GetImageData(self):
  211 + return self.vtkgdcm_reader.GetOutput()
  212 +
210 213 def GetImageWindowLevel(self, preset=WL_PRESET, multiple=WL_MULT):
211 214 """
212 215 Return image window center / level (related to brightness).
... ... @@ -1820,6 +1823,7 @@ class Image(object):
1820 1823 self.time = parser.GetImageTime()
1821 1824 self.type = parser.GetImageType()
1822 1825 self.size = (parser.GetDimensionX(), parser.GetDimensionY())
  1826 + self.imagedata = parser.GetImageData()
1823 1827  
1824 1828 if (parser.GetImageThickness()):
1825 1829 try:
... ...