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Commit c48845ff11a1b5183b9b648e0873c2cc3c84d20a

Authored by tfmoraes
1 parent a2f19a00
Exists in master and in 68 other branches 3d_inter_style, MIPs, beta3, beta4, brush_pix, canvas_reeng, canvas_text, casmoothing_cython, clean, command-line, cython_threshold, debian_cython, editor_improvements, encoding, ff_mask, ff_mask_improv, ffill_gui, ffill_segmentation, fill_holes_auto, fixes_pre_beta5, floodfill, get_pixel, import_mesh, interactor_style, inv3.0.1, invesalius-libift, mactoolbar, mactoolbar_bkp, manual_v3.1, mask_boolean_op, mask_boolean_op_bkp, mask_copy, mask_greatest_component, measure, measure_canvas, measure_improvements, measure_placement_test, measure_spacing, orientation, phoenix, region_growing_confidence, remote, remove_local_wxpython, rmatsuda-fix_ref_MTC, rmatsuda-fix_remove_marker_bug, rmatsuda-trigger_bug_fix, rotvol, segmentation_menu, select_part, smoothing_bin, smoothing_bin_pll, surface_area, threshold_history, user_guide_en, usp-navegador, vti, vtk6, watershed, watershed_improvements, watershed_improvements_bkp, watershed_merge, workdir, wwwlgui, wx2.9_mac, wxgtk3, wxgtk3_b5, wxgtk3_bkp, xmartlabs-command-line

ENH: Applied last victor's patch

Showing 1 changed file with 10 additions and 30 deletions   Show diff stats
invesalius/data/co_registration.py
  Diff comments   View file @c48845f
... ... @@ -9,14 +9,11 @@ import project
9 9 class Corregister(threading.Thread):
10 10  
11 11 def __init__(self, bases, flag):
12   -
13 12 threading.Thread.__init__(self)
14   - self.M = bases[0]
15   - self.Minv = bases[1]
16   - self.N = bases[2]
17   - self.Ninv = bases[3]
18   - self.q1 = bases[4]
19   - self.q2 = bases[5]
  13 + self.Minv = bases[0]
  14 + self.N = bases[1]
  15 + self.q1 = bases[2]
  16 + self.q2 = bases[3]
20 17 self.flag = flag
21 18 self._pause_ = 0
22 19 self.start()
... ... @@ -49,13 +46,6 @@ class Corregister(threading.Thread):
49 46 return coord
50 47  
51 48 def run(self):
52   - #Image limits to use in simulation
53   - #bounds = array(project.Project().imagedata.GetBounds())
54   - #im_simu = bounds
55   - #im_simu[0] = bounds[0] - 10.0
56   - #im_simu[2] = bounds[2] - 10.0
57   - #im_simu[4] = bounds[4] - 10.0
58   -
59 49 while self.flag == True:
60 50 #Neuronavigation with Polhemus
61 51 trck = self.Coordinates()
... ... @@ -63,21 +53,11 @@ class Corregister(threading.Thread):
63 53 img = self.q1 + (self.Minv*self.N)*(tracker - self.q2)
64 54 coord = [float(img[0]), float(img[1]), float(img[2])]
65 55 ps.Publisher().sendMessage('Co-registered Points', coord)
66   -
  56 + coord_cam = float(img[0]), float(img[1]), float(img[2])
  57 + ps.Publisher().sendMessage('Set ball reference position based on bound', coord_cam)
  58 + ps.Publisher().sendMessage('Set camera in volume', coord_cam)
  59 + wx.CallAfter(ps.Publisher().sendMessage, 'Render volume viewer')
  60 + wx.CallAfter(ps.Publisher().sendMessage, 'Co-registered Points', coord)
  61 + sleep(0.05)
67 62 if self._pause_:
68 63 return
69   -
70   - #Loop for simulate Polhemus movement and Neuronavigation
71   - #for i in range(0, 5, 2):
72   - # while im_simu[i] < (bounds[i+1]+10.0):
73   - # im_init = matrix([[im_simu[0]], [im_simu[2]], [im_simu[4]]])
74   - # #mudanca coordenada img2plh
75   - # tr_simu = self.q2 + (self.Ninv*self.M)*(im_init - self.q1)
76   - # #mudanca coordenada plh2img
77   - # img_final = self.q1 + (self.Minv*self.N)*(tr_simu - self.q2)
78   - # #publica as alteracoes que devem ser feitas nas fatias
79   - # coord = [float(img_final[0]), float(img_final[1]), float(img_final[2])]
80   - # ps.Publisher().sendMessage('Co-registered Points', coord)
81   - # im_simu[i] = im_simu[i] + 4.0
82   - # if self._pause_:
83   - # return
... ...