21 Sep, 2016

1 commit

25 Aug, 2016

1 commit

  • c79f0659   Select mask part tool (#50) ... Browse File » 
    * Starting to select part to new mask

* Showing the selected part

* Improvement

* Better create_new_mask method and doc

* Removed the old method to add new mask

* Better method to get the position of the clicked voxel

* Option to deselect part

* Not setting new mask as current in task_slice

* Strip white spaces and better doc in Mask create_mask class

* Showing dialog

* Appending the mask only after the proccess is over

* Better gui
    Thiago Franco de Moraes
     

08 Jul, 2016

1 commit

02 Jun, 2015

1 commit

28 May, 2015

1 commit

08 May, 2015

3 commits

06 May, 2015

3 commits

  • 7af56b45   Ctrl-scroll changing watershed brush size Browse File »
    Thiago Franco de Moraes
     
  • 6c04cfa4   Ctrl+scroll size the spinctrl Browse File »
    Thiago Franco de Moraes
     
  • 33bc5262   Adpated InVesalius to run in wxpython3 ... Browse File » 
    Fixed problems with sizers, colors ans panel sizes.

Created functions to calculate panel sizes inside foldpanelbar

Showing the left-down panel where masks and surfaces info are showed

applyied the patches from Olly Betts to run in wxpython3

The gradient widget is working

The comboboxes from mask properties are working now.

The problem was that combobox must not empty.

Surface task is working again

Putting combobox thresholds presets in a new line

putting the import pil inside a try except

expanding the label 'set predefined or manual threshold'

showing the buttons when importing a dicom

better layout to task_slice

the size of the data_notebook

the size of the buttons inside of data_notebook

the size of the volume viewer icons

solved the problem with position of statusbar using idle event

Solved the problem with left icons

Added Olly Betts as contributor

Added Olly Betts as contributor

Calculating best size to data notebook

Removed the background colors

Better sizing, but not completed.

Tests

data notebook with better size

Better sizings

Removed some unused codes

Fixed the problems with backgroundcolour from statictext in the taskbar

better spacings

Align button "Create surface" to the right
    Thiago Franco de Moraes
     

20 Apr, 2015

1 commit

  • 6b7a5567   Improvements to watershed segmentation tool (algorithm, connectivity, gui to config). ... Browse File » 
    It adds:

- A configuration GUI
    - To choose the algorithm (watershed and watershed ift).
    - connectivity.

- Option to use WW&WL

- Runs the 3D version in another process.

Created a class to store watershed configs

Added the option to use or not the ww&wl

watershed now have its own cursor object

unsubscribing pubsubs from watershed when swap to other style

gui description

Added a gui to set some configs from watershed

Removed set operation from watershed style

Not applying border detection (gradient) when using watershed ift

runing 3d watershed using multiprocessing

Little improvements

added a icon to the watershed configuration
    Thiago Franco de Moraes
     

23 Feb, 2015

1 commit

12 Feb, 2015

1 commit

24 Jun, 2014

1 commit

23 Jun, 2014

1 commit

  • c180da8d   This implements the segmentation watershed algorithm to InVesalius. ... Browse File » 
    Watershed is a very useful algorithm to segment brain, for example. The
implementation used is from scikit image. Before the segmentation, a
ww&wl is applied and a morphological gradient is applied, to extract the
borders of the image. It can be used to 2D slices or to all slices (via
expand button). It was created a new slice interaction style: WaterShedInteractorStyle.

Starting to using watershed

Added suport to erase a mark

Applying threshold before starting watershed mode

Watershed 3D (only markers from axial)

Watershed 3D

Marking the mask as edited when using watershed tool

Fixed the problem of not deleting watershed interactor style

Not flushing buffer (it's not necessary)

Not hidding wx's cursor when marking to watershed

Removed the vtk colour part from watershed style

Removed the vtk colour part from watershed style

micro-optimization

Removing aux matrix when opening a new dicom dir

not showing watershed markers when mask is hidden

Only doing watershed when user marks back and foreground.

Reloading all mask slice when watershed is expanded

showing (hidding) watershed marks when enabled (disabled)

cleaning undo redo when watershed is applied (TODO create undo redo to watershed)

Interface to select watershed operation
    Thiago Franco de Moraes
     

09 Apr, 2014

1 commit

07 Apr, 2014

1 commit

04 Apr, 2014

1 commit

17 Oct, 2012

1 commit

12 Sep, 2012

1 commit

04 Sep, 2012

1 commit

16 Aug, 2012

1 commit

20 Apr, 2012

2 commits

27 Mar, 2012

1 commit

20 Mar, 2012

1 commit

  • 00952d8a   Generating surface again, from binary (if the mask was edited) or the original. ... Browse File » 
    When the user tries to generates a surface from a edited mask, the user
is aske about the method to generate the surface: Binary, Context aware
smoothing or invesalius3.b2

Squashed commit of the following:

commit 480c88b680a9d79c977d3a8b81b9b25114dad43b
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Tue Mar 20 10:56:41 2012 -0300

    Not saving the project when a new case is opened

commit 1233e37982783412fd1a092820ddb55f60c7df79
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Tue Mar 20 10:51:04 2012 -0300

    Generating surface from edited masks, the user can select to use the context aware smoothing or be a binary

commit e722ea910db2931b866dfa647fcb5cc3a80d5675
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Tue Mar 20 10:47:10 2012 -0300

    Added a new dialog related to the generation surface whose mask was edited
    tfmoraes
     

28 Dec, 2011

1 commit

29 Nov, 2010

1 commit

06 Oct, 2010

1 commit

20 May, 2010

1 commit

05 Mar, 2010

2 commits

19 Feb, 2010

1 commit

03 Feb, 2010

2 commits

27 Jan, 2010

4 commits