31 Aug, 2012

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26 Jun, 2012

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  • The old code to fix gantry tilt was not working with the memmapped
    numpy array. That was rewrite so to work with memmapped numpy array
    using scipy.ndimage.shift. In
    the new code I'm not recalculating the new z-spacing anymore.
    
    Squashed commit of the following:
    
    commit 574b9b042bc6a8585efcdb4fd12a65c4b43e0840
    Author: Thiago Franco de Moraes <totonixsame@gmail.com>
    Date:   Tue Jun 26 15:19:08 2012 -0300
    
        Removed the code to calculate a new spacing, it's not necessary
    
    commit 4f91d993995130618275c7aeede4f6502ae66e0c
    Author: Thiago Franco de Moraes <totonixsame@gmail.com>
    Date:   Tue Jun 26 14:44:22 2012 -0300
    
        Not rounding spacing values to 2 decimal houses anymore
    
    commit 3313175cdc2a2c22c04bf2d8545c50ede86ced66
    Author: Thiago Franco de Moraes <totonixsame@gmail.com>
    Date:   Mon Jun 25 16:50:56 2012 -0300
    
        Testing not applying the translate_coef
    
    commit 363c1ce0bcb2860c4a764201ea5525c865d439dc
    Author: Thiago Franco de Moraes <totonixsame@gmail.com>
    Date:   Mon Jun 25 13:22:08 2012 -0300
    
        Changing spacing values when fixing gantry tilt
    
    commit 30785e8ebb945250e45a8b8768253b196112a801
    Author: Thiago Franco de Moraes <totonixsame@gmail.com>
    Date:   Tue Jun 12 15:32:50 2012 -0300
    
        Using scipy.ndimage.shift to gantry tilt correction
    tfmoraes
     

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  • * Handling sagittal and coronal (not tested) images. Sagittal and coronal
     images are stored in memmap matrix as axial doing insertion acording to
     orientation;
    * Axial, sagittal and coronal are showed in its correspondent plane.
    tfmoraes
     

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