20 Apr, 2015

1 commit

  • 6cf4c91a   Adds boolean operation to mask (union, xor, diff, intersection) ... Browse File » 
    Implements boolean operations to masks. The user has a gui to choose the
masks and the operation (union, xor, diff, intersection). Then
InVesalius creates a new mask with the result of the operation.

Doing some boolean operations

Added Intesection and XOR

There was an error in the bool diff operation

Gui improvements

changed "xor" to "exclusive disjuction"

added the icons

Improvements to the boolean operation dialog

Added a menu to mask operations (booleans is there)
    Thiago Franco de Moraes
     

27 Feb, 2015

2 commits

26 Feb, 2015

1 commit

25 Feb, 2015

3 commits

23 Feb, 2015

1 commit

06 Aug, 2014

1 commit

24 Jun, 2014

1 commit

23 Jun, 2014

1 commit

  • c180da8d   This implements the segmentation watershed algorithm to InVesalius. ... Browse File » 
    Watershed is a very useful algorithm to segment brain, for example. The
implementation used is from scikit image. Before the segmentation, a
ww&wl is applied and a morphological gradient is applied, to extract the
borders of the image. It can be used to 2D slices or to all slices (via
expand button). It was created a new slice interaction style: WaterShedInteractorStyle.

Starting to using watershed

Added suport to erase a mark

Applying threshold before starting watershed mode

Watershed 3D (only markers from axial)

Watershed 3D

Marking the mask as edited when using watershed tool

Fixed the problem of not deleting watershed interactor style

Not flushing buffer (it's not necessary)

Not hidding wx's cursor when marking to watershed

Removed the vtk colour part from watershed style

Removed the vtk colour part from watershed style

micro-optimization

Removing aux matrix when opening a new dicom dir

not showing watershed markers when mask is hidden

Only doing watershed when user marks back and foreground.

Reloading all mask slice when watershed is expanded

showing (hidding) watershed marks when enabled (disabled)

cleaning undo redo when watershed is applied (TODO create undo redo to watershed)

Interface to select watershed operation
    Thiago Franco de Moraes
     

08 Apr, 2014

1 commit

07 Apr, 2014

1 commit

04 Apr, 2014

1 commit

25 Oct, 2013

3 commits

18 Sep, 2013

2 commits

16 Sep, 2013

2 commits

04 Sep, 2013

2 commits

03 Sep, 2013

1 commit

26 Aug, 2013

1 commit

20 Aug, 2013

1 commit

12 Aug, 2013

1 commit

08 Aug, 2013

2 commits

07 Aug, 2013

1 commit

23 May, 2013

1 commit

  • 3289c90d   Added more colorschemes and a new GUI to create more colorschemes. ... Browse File » 
    - Added support to colorschemes from OsiriX.
- Created a new GUI to create colorschemes
  - This GUI generates the event EVT_CLUT_NODE_CHANGED when the user
    changes the position and colours of the nodes.
  - This GUI has style setted to FRAME_FLOAT_ON_PARENT, to make this GUI
    stay always on top of invesalius GUI.
- Added pubsub event "Update window level text" to change WW&WL text

Added (but not integrated) the clut_imagedata widget

Remove unused imports from clut_imagedata

The ClutImagedata is changing the slice lookuptable

Showing the histogram at the clut widget

Using checkbox instead of radiobutton to color menu

Applying ww & wl changes to the color table generated by clut_imagedata

Window&level affects clut colors

Window&level affects clut colors

Removed non-color presets from color preset dir

Hidding clutimagedatadialog when user selects another color preset

Removed idiot print

Keeping nodes after closing clutimagedata

Not passing ww&wl to clutimagedata anymore

Generating EVT_CLUT_POINT_MOVE when the clutimagedata is shown

Since EVT_SHOW binded to a wx.Panel is not working with 2.8, I'm binding
the OnShow method to EVT_IDLE and unbinding after the first time this
event is generated.

Using keyboard left and right to change nodes

Enter give the user option to change node colour

(shift +) Tab selects the next (previous) node

Improvements on the drawing of clut_imagedata

ClutImagedataDialog is dealing with clut_imagedata events

Added properties in clut_imagedata to get the ww&wl

Added a pubsub method to update the ww&wl text

WW&WL interactor style affects clut_imagedata widget

Style: the position of window_level and window_width

Delete key deletes a node

Cleaning and closing clut_imagedata dialog when a project is closed

Refreshing clut_imagedata after user change node color

Clut_imagedata dialog setted style to STAY_ON_TOP

Change clut_imagedata dialog style from wx.STAY_ON_TOP to wx.FRAME_FLOAT_ON_PARENT

Cleaning code related to clut_imagedata dialog in viewer_slice

Cleaning code related to clut_imagedata dialog in viewer_slice

EVT_CLUT_POINT_MOVE renamed to EVT_CLUT_NODE_CHANGED

Generating event when user selects custom color scheme

Removed OnShow method from clut_imagedata

Remove useless prints

Reseting things when closing a project
    Thiago Franco de Moraes
     

11 Oct, 2012

1 commit

  • 5c132b7a   Fixed some inconsistencies in the undo/redo tool: ... Browse File » 
    1. Only disabling undo and redo when user deletes a mask is visible
2. When user sets a new threshold the undo/redo history is cleared.
This won't be needed when undo/redo will work with threshold changing.

Squashed commit of the following:

commit f49d8d6713b67807772958faad0e7f98d17d288c
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Thu Oct 11 10:18:38 2012 -0300

    When user sets a new threshold the undo/redo history is cleared

commit 65e94cbd896e4df0c7d797ac98960e5e129c5f3e
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Thu Oct 11 09:25:35 2012 -0300

    Only disabling undo and redo when user deletes a mask is visible
    tfmoraes
     

10 Oct, 2012

1 commit

14 Sep, 2012

1 commit

04 Sep, 2012

1 commit

06 Aug, 2012

1 commit

27 Jul, 2012

1 commit

20 Apr, 2012

1 commit

27 Mar, 2012

1 commit

20 Mar, 2012

1 commit

  • 00952d8a   Generating surface again, from binary (if the mask was edited) or the original. ... Browse File » 
    When the user tries to generates a surface from a edited mask, the user
is aske about the method to generate the surface: Binary, Context aware
smoothing or invesalius3.b2

Squashed commit of the following:

commit 480c88b680a9d79c977d3a8b81b9b25114dad43b
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Tue Mar 20 10:56:41 2012 -0300

    Not saving the project when a new case is opened

commit 1233e37982783412fd1a092820ddb55f60c7df79
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Tue Mar 20 10:51:04 2012 -0300

    Generating surface from edited masks, the user can select to use the context aware smoothing or be a binary

commit e722ea910db2931b866dfa647fcb5cc3a80d5675
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Tue Mar 20 10:47:10 2012 -0300

    Added a new dialog related to the generation surface whose mask was edited
    tfmoraes