26 Feb, 2015

2 commits

23 Feb, 2015

1 commit

12 Feb, 2015

1 commit

23 Jun, 2014

1 commit

  • c180da8d   This implements the segmentation watershed algorithm to InVesalius. ... Browse File » 
    Watershed is a very useful algorithm to segment brain, for example. The
implementation used is from scikit image. Before the segmentation, a
ww&wl is applied and a morphological gradient is applied, to extract the
borders of the image. It can be used to 2D slices or to all slices (via
expand button). It was created a new slice interaction style: WaterShedInteractorStyle.

Starting to using watershed

Added suport to erase a mark

Applying threshold before starting watershed mode

Watershed 3D (only markers from axial)

Watershed 3D

Marking the mask as edited when using watershed tool

Fixed the problem of not deleting watershed interactor style

Not flushing buffer (it's not necessary)

Not hidding wx's cursor when marking to watershed

Removed the vtk colour part from watershed style

Removed the vtk colour part from watershed style

micro-optimization

Removing aux matrix when opening a new dicom dir

not showing watershed markers when mask is hidden

Only doing watershed when user marks back and foreground.

Reloading all mask slice when watershed is expanded

showing (hidding) watershed marks when enabled (disabled)

cleaning undo redo when watershed is applied (TODO create undo redo to watershed)

Interface to select watershed operation
    Thiago Franco de Moraes
     

16 Dec, 2013

1 commit

31 Oct, 2013

1 commit

27 Sep, 2013

1 commit

26 Sep, 2013

2 commits

24 Sep, 2013

2 commits

23 Sep, 2013

2 commits

18 Sep, 2013

1 commit

16 Sep, 2013

2 commits

13 Sep, 2013

1 commit

04 Sep, 2013

2 commits

03 Sep, 2013

2 commits

26 Aug, 2013

1 commit

16 Aug, 2013

2 commits

08 Aug, 2013

2 commits

07 Aug, 2013

1 commit

23 May, 2013

1 commit

  • 3289c90d   Added more colorschemes and a new GUI to create more colorschemes. ... Browse File » 
    - Added support to colorschemes from OsiriX.
- Created a new GUI to create colorschemes
  - This GUI generates the event EVT_CLUT_NODE_CHANGED when the user
    changes the position and colours of the nodes.
  - This GUI has style setted to FRAME_FLOAT_ON_PARENT, to make this GUI
    stay always on top of invesalius GUI.
- Added pubsub event "Update window level text" to change WW&WL text

Added (but not integrated) the clut_imagedata widget

Remove unused imports from clut_imagedata

The ClutImagedata is changing the slice lookuptable

Showing the histogram at the clut widget

Using checkbox instead of radiobutton to color menu

Applying ww & wl changes to the color table generated by clut_imagedata

Window&level affects clut colors

Window&level affects clut colors

Removed non-color presets from color preset dir

Hidding clutimagedatadialog when user selects another color preset

Removed idiot print

Keeping nodes after closing clutimagedata

Not passing ww&wl to clutimagedata anymore

Generating EVT_CLUT_POINT_MOVE when the clutimagedata is shown

Since EVT_SHOW binded to a wx.Panel is not working with 2.8, I'm binding
the OnShow method to EVT_IDLE and unbinding after the first time this
event is generated.

Using keyboard left and right to change nodes

Enter give the user option to change node colour

(shift +) Tab selects the next (previous) node

Improvements on the drawing of clut_imagedata

ClutImagedataDialog is dealing with clut_imagedata events

Added properties in clut_imagedata to get the ww&wl

Added a pubsub method to update the ww&wl text

WW&WL interactor style affects clut_imagedata widget

Style: the position of window_level and window_width

Delete key deletes a node

Cleaning and closing clut_imagedata dialog when a project is closed

Refreshing clut_imagedata after user change node color

Clut_imagedata dialog setted style to STAY_ON_TOP

Change clut_imagedata dialog style from wx.STAY_ON_TOP to wx.FRAME_FLOAT_ON_PARENT

Cleaning code related to clut_imagedata dialog in viewer_slice

Cleaning code related to clut_imagedata dialog in viewer_slice

EVT_CLUT_POINT_MOVE renamed to EVT_CLUT_NODE_CHANGED

Generating event when user selects custom color scheme

Removed OnShow method from clut_imagedata

Remove useless prints

Reseting things when closing a project
    Thiago Franco de Moraes
     

28 Mar, 2013

1 commit

  • 8d9b272f   Created InteractorStyles to handle the interactivity in the viewer_slice ... Browse File » 
    The idea is each interactivity and functionality being implemented as
InteractorStyles. In this branch I created InteractorStyles to handle:
zoom, WW & WL, edition, pan, spin, linear measure and angular measure.

I created a pattern, each InteractorStyle receives as parameter only a
viewer_slice. And a InteractorStyle may create a SetUp and a CleanUp
methods. The SetUp method runs after the creation of the InteractorStyle
and can be used to prepare the ground before the InteractorStyle be
used. The CleanUp method can be used to cleans and unset anything used
during the InteractorStyle use.

This idea can be used in the future to give InVesalius the feature to
run pluggins.

Squashed commit of the following:

commit c48e9290dc91009cf00dc3def692e51c6cebe3e0
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Thu Mar 28 09:18:11 2013 -0300

    Starting with the ww and wl text hidden

commit 5c9a305f4c9821327fb47594a4833f0def899be8
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Wed Mar 27 17:02:37 2013 -0300

    Created a protocol to setup and cleanup when a style is setted

commit b557c29890e70ba1337cd59bf54b29c7f1d2f11e
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Wed Mar 27 15:49:04 2013 -0300

    Cleaning unneeded code from data/styles.py

commit 46f4452a1b5c39e826de86c383345df72eeeb9b1
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Wed Mar 27 15:41:41 2013 -0300

    Cleaning code related to vtk events from viewer_slice

commit 4a7add3a2360df5320a9c7c78d49e533c61997c4
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Wed Mar 27 15:23:19 2013 -0300

    The context menu is working again in the viewer_slice.py

commit 6c0a5b4c281b1d79d5d0fc21728c08868cc71bb2
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Wed Mar 27 15:08:39 2013 -0300

    OnBrushRelease was not binded to 'LeftButtonReleaseEvent'

commit 7c998231f939f0552a99ff41c98d1ac3605ce57d
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Wed Mar 27 15:00:48 2013 -0300

    Added get_coordinate_cursor to CrossInteractorStyle

commit 9cbf791e35f212fdf2b10ddf976636fb6581c7e9
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Tue Mar 26 16:56:37 2013 -0300

    Created a new interactor style to handle the editor

commit 91ea38bc564f284c3994463530e94847ff2d2bd1
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Tue Mar 26 14:50:16 2013 -0300

    Added a comment to DefaultInteractorStyle

commit b4a359d6ebbd778f9cf4dcb23edeff9f79884344
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Tue Mar 26 14:47:56 2013 -0300

    Using DefaultInteractorStyle to const.STATE_DEFAULT

commit ea58ed7c4ac5d7e5c640a49ccce5368e82dea611
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Tue Mar 26 14:43:20 2013 -0300

    Renamed RightZoomInteractorStyle to DefaultInteractorStyle

commit b7ec9d2e436da10570ecbcf7f25ca32213200872
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Tue Mar 26 14:19:29 2013 -0300

    Added MouseWheelForwardEvent and MouseWheelBackwardEvent to the RightZoomInteractorStyle

commit 13b7b7ff758a45cf9e89b9ddbcdd190b2de8a8b9
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Tue Mar 26 14:07:01 2013 -0300

    Passing the viewer to all interactor styles

commit 89d8c6172efeec81359417a1943175968701204a
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Tue Mar 26 10:25:18 2013 -0300

    Created a new interactor style to change slices with the mouse movement

commit 88fe930f156968916c77b789a5acfded93bd4988
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Tue Mar 26 09:32:37 2013 -0300

    Cleaning unneeded code related to the zoom

commit 58ec7c3a2b56db90ad6ca5fc06da8df731481634
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Tue Mar 26 09:26:31 2013 -0300

    Created a new interactor style to handle the Zoom camera by selecting a region

commit 4df1d0612d7041ac2ecc27173483a79dc32b9bec
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Tue Mar 26 09:12:00 2013 -0300

    Created a new interactor style to handle the Zoom camera

commit 2ae6b47162dc63a104edcbd6bb398702642c6d08
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Mon Mar 25 16:32:13 2013 -0300

    Renamed ZoomInteractorStyle to RighZoomInteractorStyle

commit 96dd7511bbbd28c9161dea9c3e2bc466be2646fe
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Mon Mar 25 16:25:55 2013 -0300

    Created a method to reset camera after a span camera

commit 1a85e2a409c9278c6fabae045fbf33a6bc25900f
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Mon Mar 25 16:01:14 2013 -0300

    Created a new interactor style to handle the Spin camera

commit 354f97e80f0f917cc825554b4cf077bbd410a15b
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Mon Mar 25 14:55:46 2013 -0300

    STYLE: Renamed the class LinearMeasure and AngularMeasure

commit 87eacea8d9d7b2a460a8156b45c372fa8d6a32f4
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Fri Mar 22 16:53:16 2013 -0300

    Created a new interactor style to the pan

commit fd6166669bb91315308844a461bd7b8d579f4e79
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Fri Mar 22 16:42:25 2013 -0300

    Removed code which handle angular measurements from viewer_slice

commit 3eeb17e13d68e4b08a88cbff283a3c6e9995d92b
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Fri Mar 22 16:40:16 2013 -0300

    Fix in a comment

commit 3ecbb5f87d2bdd3e343e3db26cc4298285e258fc
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Fri Mar 22 16:38:50 2013 -0300

    Created a new interactor style to handle angular measurements

commit aefd974a410622be9d300330702a99e5b76a51f4
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Fri Mar 22 14:43:05 2013 -0300

    Created a new interactor style to handle Linear measure

commit 13f819f768cfbf96681f14da0f5f253878c12f16
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Fri Mar 22 10:52:45 2013 -0300

    Created a new interactor style to handle Window level & width

commit f7b5fc4d6a0a17b0359510217568644ca344dc5a
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Thu Mar 21 15:40:43 2013 -0300

    Created a new interactor style to handle the cross tool
    Thiago Franco de Moraes
     

06 Dec, 2012

1 commit

10 Oct, 2012

1 commit

31 Aug, 2012

1 commit

30 Aug, 2012

1 commit

06 Aug, 2012

2 commits

27 Jul, 2012

1 commit

25 Jun, 2012

2 commits

  • 6f8c898a   Resolved the problem with removing measures and when opening a inv3 file and all… ... Browse File » 
    … measures are showed in the same slice

The problem with removing measures was because a change in pubsub: it
only accepts strings in the sendMessage message parameter or tuples of
string. I was using int. So it was only necessary to change that in this
way: "Remove Actor " + str(slice_number). The problem when opening an
inv3 file was because I was not verifying if the measure being added is
from the actual showed slice.

Squashed commit of the following:

commit 59bd23b0141aaa504b4af5a3cdc781b07e09889f
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Mon Jun 25 14:43:53 2012 -0300

    When opening a inv3 file only the measures from the showing slice in showed

commit 07fc45a907438cb7ebdcaca84d47f2b04d301da2
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Mon Jun 25 14:24:47 2012 -0300

    Adding measures actor from saved inv3 when it's opened

commit 46b02de95bd2f1676a8bd96b18c48301047f9939
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Mon Jun 25 14:17:15 2012 -0300

    Removing the measures is working again
    tfmoraes
     
  • 68c68639   Adding the crosses on the overlay renderer instead of adding on the main ... Browse File » 
    one.

When using the cross tool, the slices may overlap the cross making it
difficult to use. To avoid that I'm putting the cross in the overlay
renderer instead of adding on the main one. The overlay renderer can be
used to these case.
    tfmoraes
     

29 Mar, 2012

1 commit