Thiago Franco de Moraes / invesalius3

20 Apr, 2015

1 commit

6b7a5567 Improvements to watershed segmentation tool (algorithm, connectivity, gui to config). ... Browse File »

It adds:

- A configuration GUI
    - To choose the algorithm (watershed and watershed ift).
    - connectivity.

- Option to use WW&WL

- Runs the 3D version in another process.

Created a class to store watershed configs

Added the option to use or not the ww&wl

watershed now have its own cursor object

unsubscribing pubsubs from watershed when swap to other style

gui description

Added a gui to set some configs from watershed

Removed set operation from watershed style

Not applying border detection (gradient) when using watershed ift

runing 3d watershed using multiprocessing

Little improvements

added a icon to the watershed configuration

2015-04-20 09:39:06 -0300

23 Feb, 2015

1 commit

2ecc3799 Revert "ENH: Update neuronavigator modules" ... Browse File »
```
This reverts commit 80f95c3208f09123327b436808e244413b2963a2.
```
vhosouza
2015-02-23 15:29:38 -0300

12 Feb, 2015

1 commit

80f95c32 ENH: Update neuronavigator modules ... Browse File »
```
Improvement of all navigation modules, including MicronTracker spatial
tracker support and NIFTI image type import.
```
vhosouza
2015-02-12 14:38:54 -0200

24 Jun, 2014

1 commit

fce40bdf Fixed: it was generating a surface when user cancels the operation Browse File »

Thiago Franco de Moraes
2014-06-24 09:29:12 -0300

23 Jun, 2014

1 commit

c180da8d This implements the segmentation watershed algorithm to InVesalius. ... Browse File »

Watershed is a very useful algorithm to segment brain, for example. The
implementation used is from scikit image. Before the segmentation, a
ww&wl is applied and a morphological gradient is applied, to extract the
borders of the image. It can be used to 2D slices or to all slices (via
expand button). It was created a new slice interaction style: WaterShedInteractorStyle.

Starting to using watershed

Added suport to erase a mark

Applying threshold before starting watershed mode

Watershed 3D (only markers from axial)

Watershed 3D

Marking the mask as edited when using watershed tool

Fixed the problem of not deleting watershed interactor style

Not flushing buffer (it's not necessary)

Not hidding wx's cursor when marking to watershed

Removed the vtk colour part from watershed style

Removed the vtk colour part from watershed style

micro-optimization

Removing aux matrix when opening a new dicom dir

not showing watershed markers when mask is hidden

Only doing watershed when user marks back and foreground.

Reloading all mask slice when watershed is expanded

showing (hidding) watershed marks when enabled (disabled)

cleaning undo redo when watershed is applied (TODO create undo redo to watershed)

Interface to select watershed operation

2014-06-23 12:06:24 -0300

09 Apr, 2014

1 commit

2f7aeff1 When there isn't a mask the task slice is disabled Browse File »

Thiago Franco de Moraes
2014-04-09 15:31:49 -0300

07 Apr, 2014

1 commit

2279df97 Fixed the problem of creation of matrix when using the button create surface Browse File »

Thiago Franco de Moraes
2014-04-07 10:41:56 -0300

04 Apr, 2014

1 commit

5bbbf954 fix the problem of invesalius not shutdown when closed Browse File »

Thiago Franco de Moraes
2014-04-04 14:35:22 -0300

17 Oct, 2012

1 commit

b2d587c7 FIX: bug in the initialization when using spanish lang because is was being sett… ... Browse File »
```
…ing custom as initial threshold preset
```
tfmoraes
2012-10-17 12:12:56 +0000

12 Sep, 2012

1 commit

77c8bbcd ENH: Fixed raycast problem and enhanced translation to pt_BR Browse File »

Paulo Henrique Junqueira Amorim
2012-09-12 11:43:16 +0000

04 Sep, 2012

1 commit

7c2fdb4b Merge branch 'surface_creation' Browse File »

tfmoraes
2012-09-04 14:14:11 +0000

16 Aug, 2012

1 commit

876d77a4 ENH: button "Save surface" changed to "Create surface" Browse File »

ruppert
2012-08-16 13:30:15 +0000

20 Apr, 2012

2 commits

8cbb2a51 ENH: When the user hides a mask the combobox in mask properties is cleaned its s… ... Browse File »
```
…election so the user can select again the previous mask selected in the combobox
```
tfmoraes
2012-04-20 13:39:24 +0000
7c4e8934 FIX: When the user wanted to change the visible mask by the combobox in the mask… ... Browse File »
```
… properties nothing changed
```
tfmoraes
2012-04-20 12:58:27 +0000

27 Mar, 2012

1 commit

903ccf9e ENH: Changed call of the Pubsub because wxPython 2.8.12.1. "ps.Pusub(). to Pusub… ... Browse File »
```
…." and "import wx.lib.pubsub as ps" to "from wx.lib.pubsub import pub as Publisher", tested in windows and ubuntu 11.10.
```
Paulo Henrique Junqueira Amorim
2012-03-27 15:44:05 +0000

20 Mar, 2012

1 commit

00952d8a Generating surface again, from binary (if the mask was edited) or the original. ... Browse File »

When the user tries to generates a surface from a edited mask, the user
is aske about the method to generate the surface: Binary, Context aware
smoothing or invesalius3.b2

Squashed commit of the following:

commit 480c88b680a9d79c977d3a8b81b9b25114dad43b
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Tue Mar 20 10:56:41 2012 -0300

    Not saving the project when a new case is opened

commit 1233e37982783412fd1a092820ddb55f60c7df79
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Tue Mar 20 10:51:04 2012 -0300

    Generating surface from edited masks, the user can select to use the context aware smoothing or be a binary

commit e722ea910db2931b866dfa647fcb5cc3a80d5675
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Tue Mar 20 10:47:10 2012 -0300

    Added a new dialog related to the generation surface whose mask was edited

2012-03-20 14:17:16 +0000