Thiago Franco de Moraes / invesalius3

16 Mar, 2017

2 commits

4068cf16 FIX: Fixed problems with import KBCT (Koning Breast CT) and Anatomage Browse Dir »

Paulo Henrique Junqueira Amorim
2017-03-16 11:03:45 -0300
72858e0b FIX: Fixed problems with import KBCT (Koning Breast CT) and Anatomage Browse Dir »

Paulo Henrique Junqueira Amorim
2017-03-16 11:03:01 -0300

09 Feb, 2017

1 commit

83bd621f Fixed error in patient id decode Browse Dir »

Paulo Henrique Junqueira Amorim
2017-02-09 09:28:18 -0200

02 Feb, 2017

1 commit

bed72ec3 Neuronavigation module update and improvement (#65) ... Browse Dir »

Neuronavigation module updatings and improvements

* Revert "Revert "ENH: Update neuronavigator modules""

This reverts commit 2ecc37998e18c762b82413314fcf75d1491ca1be.

* ENH: Update corregistration comments.

* ENH: Restructuring InVesalius Navigator spatial tracker communication.

* ENH: Restructuring the spatial tracker communication.

* ENH: Updating navigation tools.

* Code refactoring for navigator development

- Delete previous git mistakes while tracking files
- Code fix to run invesalius navigator and start code refactoring

* Update navigator GUI
- Improvement on manipulation of markers creation and edition
- Buttons and panels size adjustment

* Improvement on trackers connection
- MicronTracker supports dynamic reference

* VTK6 adjustments - SetInputData
-Using SetInputData instead SetInput

* Update Create Markers and fix sphere creation

- Improvement on manipulation of markers creation and edition
- Using SetInputConnection(GetOutputPort()) instead SetInputData(GetOutput())

* GUI update and creation of fiducial markers

* Fix Fiducial Markers

* Update - Load Fiducial points using "Load Markers"

* Fix Trackers (PLH) and Navigation

* Update ComboBox and trackers connection

* Full support for Analyze, NIfTI and PAR/REC images
- Support for Analyze, NIfTI, Compressed NIfTI and PAR/REC images
- Support for Analyze limited due to lack of orientation info
- Image orientation standardized to RAS+

* ComboBox Update
- Set "Select tracker" when the tracker is not connected

* Fixed usp-navegador version
- Changed GetValue to GetValue()
- Changed SetInputData to SetInput
- Changed SetInputConnection to SetInputData

* Manually merged rmatsuda master_merge branch to usp-navegador
- Improved navigation GUI
- Improved navigation control of spatial trackers
- Added management of makers creation
- Added dialogs for better neuronavigation control

* Added TMS trigger and enhanced tracker device control
- Serial communication to detect TMS trigger
- Added MicronTracker calibration and marker files
- Enhanced tracker manipulation

* Navigation cleaning and improvements in viewer volume
- Cleaned unecessary navigation functions
- Optimized volume camera and ball reference positions
- Enhanced markers manipulation
- Removed blank lines

* Improved task_navigator GUI
- Better code using GridBagSizer
- Removed useless code

* Improvement in coordinates handling for neuronavigation

* Significant refactor of navigation pipeline
- Improvement in navigation panel controls
- Refactoring of volume and slice updates
- Improvement in communication with tracking devices
- Refactoring of entire navigation pipeline

* Improved colour and size of navigation markers

* Added trigger and volume camera controls
- Reformulated markers creation
- Created control of volume camera
- Control for external trigger marker creation

* Minor code adjustments

* GUI improvements

* Minor code optimization
- Improved load markers

2017-02-02 11:17:10 -0200

21 Sep, 2016

1 commit

8d6196a1 ENH: Code restructuring, "invesalius.py" now "app.py" (#55) ... Browse Dir »
```
ENH: Code restructuring, invesalius.py is now app.py
```
Paulo Henrique Junqueira Amorim
2016-09-21 16:00:08 -0300

16 Aug, 2016

1 commit

cc3c0dc3 Micro ct shift delete (#46) ... Browse Dir »

* FIX: Removed vtk window warming from bitmap import

* NEW: Added support to multiple delete files with shift in import bmp files.

* NEW: Added support to multiple delete files with shift in import bmp files.

* ENH: Text align

* ENH: Removed print

* ENH: GUI improvements of import bitmap dialog

* ENH: Removed unused codes

* ENH: Removed unused codes and resized text in bitmap import error dialog

2016-08-16 10:19:57 -0300

11 Aug, 2016

1 commit

d4ff9146 Micro ct improvements (#45) ... Browse Dir »

* FIX: Error in bitmap reader in Win32

* FIX: Fixed error in window and level

* FIX: Fixed problem with inverted slices and uint16 images

* FIX: Fixed problem with resample

* ENH: Reader load spacing from txt file info

* ENH: Dialog to show that have images with different size

* ENH; Enhancemets to sort files in folder

* FIX: Changed message when are not bitmap files

* ENH: Added uCT label in menu

* ENH: Enhancements in bitmap panel

* NEW: Delete image in InVesalius import panel

* ENH: Enhancements in delete window

* ENH: Enhancements in import bitmap panel

* ENH: Enhancements to delete bmp in import bitmap panel

* ENH: Added black slice when delete last slice

2016-08-11 13:50:53 -0300

08 Jul, 2016

1 commit

794ea503 Micro ct (#40) ... Browse Dir »
```
ADD: This branch is for InVesalius to read BMP, TIF, JPEG and PNG files.
```
Paulo Henrique Junqueira Amorim
2016-07-08 15:39:51 -0300

15 Apr, 2016

1 commit

0317ac28 Adapts InVesalius to run with VTK6 (#35) ... Browse Dir »

* Showing the slices

* cursor was not displayed correctly

* Watershed using vtk6

* generating surface with vtk6

* generating preview in vtk6

* Showing raycasting with vtk6

* Showing measures with vtk6

* saving project

* Saving screenshots with vtk6

* Saving meshes with vtk6

* It was not showing surfaces created with greatest region, selected region and all regions filters

2016-04-15 14:58:18 -0300

23 Feb, 2015

1 commit

2ecc3799 Revert "ENH: Update neuronavigator modules" ... Browse Dir »
```
This reverts commit 80f95c3208f09123327b436808e244413b2963a2.
```
vhosouza
2015-02-23 15:29:38 -0300

12 Feb, 2015

1 commit

80f95c32 ENH: Update neuronavigator modules ... Browse Dir »
```
Improvement of all navigation modules, including MicronTracker spatial
tracker support and NIFTI image type import.
```
vhosouza
2015-02-12 14:38:54 -0200

02 Apr, 2014

1 commit

c733b240 FIX: Fixed problem with unicode in DICOM gender field Browse Dir »

Paulo Henrique Junqueira Amorim
2014-04-02 14:25:35 -0300

07 Aug, 2013

1 commit

d0d68211 Replacing , to . in some dicom fields Browse Dir »

Thiago Franco de Moraes
2013-08-07 14:23:21 -0300

09 Jan, 2013

1 commit

5a0925ec Set ImageType to empty when there is not this tag in dicom Browse Dir »

Thiago Franco de Moraes
2013-01-09 15:27:08 -0200

30 Nov, 2012

1 commit

27398d4a Using replace method error to decode dicom fields and avoid crashes. ... Browse Dir »

Some dicom files have the encoding setted wrongly, so when decoding a
dicom field from string to unicode some errors may happen. Python string.decode
have some methods to handle those cases. We are using the "replace" one,
the characters it cannot decode to unicode it replaces with a character
showing the character was not decoded.

2012-11-30 13:27:37 -0200

29 Nov, 2012

1 commit

54759b5d Handling KeyError exception on dicom_reader to dicom with nonstandard encoding ... Browse Dir »
```
Some dicom files have encoding names that do not follow the standard, in
these cases a default dicom encoding (ISO_IR 100) is used.
```
Thiago Franco de Moraes
2012-11-29 11:26:51 -0200

24 Sep, 2012

2 commits

49c1f7b2 FIX: problem with encoding on importing dicom, reported by the user p passant in InVesalius forum Browse Dir »

tfmoraes
2012-09-24 17:04:07 +0000
680be8e5 STYLE: 2 blank lines between classes Browse Dir »

tfmoraes
2012-09-24 17:02:48 +0000

26 Jun, 2012

1 commit

295c16a0 The code fix gantry tilt was rewrite to use the numpy arrays. ... Browse Dir »

The old code to fix gantry tilt was not working with the memmapped
numpy array. That was rewrite so to work with memmapped numpy array
using scipy.ndimage.shift. In
the new code I'm not recalculating the new z-spacing anymore.

Squashed commit of the following:

commit 574b9b042bc6a8585efcdb4fd12a65c4b43e0840
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Tue Jun 26 15:19:08 2012 -0300

    Removed the code to calculate a new spacing, it's not necessary

commit 4f91d993995130618275c7aeede4f6502ae66e0c
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Tue Jun 26 14:44:22 2012 -0300

    Not rounding spacing values to 2 decimal houses anymore

commit 3313175cdc2a2c22c04bf2d8545c50ede86ced66
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Mon Jun 25 16:50:56 2012 -0300

    Testing not applying the translate_coef

commit 363c1ce0bcb2860c4a764201ea5525c865d439dc
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Mon Jun 25 13:22:08 2012 -0300

    Changing spacing values when fixing gantry tilt

commit 30785e8ebb945250e45a8b8768253b196112a801
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Tue Jun 12 15:32:50 2012 -0300

    Using scipy.ndimage.shift to gantry tilt correction

2012-06-26 18:24:48 +0000