17 Aug, 2021

3 commits

16 Aug, 2021

1 commit

12 Aug, 2021

1 commit

09 Aug, 2021

1 commit

  • 9de68587   Coil projection on peel (#308) ... Browse Code » 
    * add add_object_orientation_disk and add_addobjectArrow functions, add orientation disk and projection arrow actors

* add getCenter and getNormal functions, create locator and add self.peel_centers and self.peel_normals variables, add to calculate normals and centers when calling getPeelActor (new peel)

* add GetPeelCenters and Initlocator_viewer and corresponding publisher call

* add in  OnLinkBrain and TractographyPanel class (OnSelectPeelingDepth) call to get peel centers and normals and initiator)

* remove print on GetPeelCenters and Initlocator_viewer

* add objectArrowlocation to calculate coil norms and directions

* Add UpdateObjectArrowOrientation and Getcellintersection

  - getcellintersection function calculates the intersection between the
  coil normal and the peel center
  -calculates the angle between the coil normal and the normal of the
  center of the intersected cell
  -shows the coil projected with arrow and disk
  -Color of the disk and arrow change according to the value of the
  angle between the normal of the coil and the peel center mesh
  intersected.
  -updateobjectarroworientation is used to show and update the position
  of the projected arrow and disk

* add comments, removed not used code on class def, modify currentPeel as local variable

* modify getPeelActor removing input currentPeel

* add affine_vtk matrix as input to getPeelActor, add change position of curent peel

* add case when not intersection found in getcellintersection function

* add remove arrow and disk actor only when intersecting with the peel

* add comments to getcellintersection function, remove TODO

* add comment to getcellintersection

* add transformpeelposition function

* add setvisibility to arrow and disk actor on OnNavigationStatus

* add tangent lines for debuggint at getcellintersection function

* add coil_dir from coordinates from tracker to objectArrowlocation

* modify visibility of disk and coil projection arrow, to be shown when coil is not shown

* comment tangent lines for debuggin on getcellintersection

* modify names of functions to invesalius naming convention

* correct mispelling error when calling GetCellIntersection

* add angle threshold for projectio arrow in constansts

* add angle threshold for arrow projection in constants

* change size of disk and arrow in coil projection

* add normal lines for debugging arrow projection

* Modify function names to invensalius convention

* add condition for track if peel is loaded or not

* fix removing arrow and disk projection when distance is larger than set value, removing normal lines for debugging

* clean comments

* add self.peel_loaded to vis_components

* Modify UpdatePeelVisualization to pass peel_loaded from navigation class

* change color disk and arrow
    sotodela
     

06 Aug, 2021

1 commit

05 Aug, 2021

2 commits

04 Aug, 2021

3 commits

03 Aug, 2021

2 commits

02 Aug, 2021

1 commit

29 Jul, 2021

4 commits

  • ee0aec22   Calling slice_data.text from slice_data Browse Code »
    Thiago Franco de Moraes
     
  • 3fb68523   Using canvas renderer instead of vtkLine to show a colored box around ... Browse Code » 
    the renderer.
    Thiago Franco de Moraes
     
  • 24de5835   ADD: Remote control via Socket.IO (#282) ... Browse Code » 
    * ADD: Remote control via Socket.IO

- Add a command line option (--remote-host) to connect to
  a remote server via Socket.IO.

- Add a hook to send all internal events to the remote server using
  `from_neuronavigation` event.

- Add a Socket.IO event listener for `to_neuronavigation` events, send
  publish those events internally.

* FIX: WxPython-UI modifying Socket.IO messages not working

* FIX: Allow sending message to neuronavigation with data None

* Review comments: Create RemoteControl class under invesalius/net

* Review comments: Move invesalius_pubsub dir to invesalius/pubsub

* ADD: Python modules needed by Socket.IO to requirements.txt

* MOD: Move python-socketio to optional-requirements.txt

- Also, change the requirement name from python-socketio to
  python-socketio[client], causing all dependencies needed by the Socket.IO
  client (e.g., requests) to be installed

- Due to that, remove explicit 'requests' library from the requirements

Co-authored-by: Olli-Pekka Kahilakoski <olli-pekka.kahilakoski@aalto.fi>
    okahilak
     
  • 55ce1205   MOD: Refactor task_navigator.py ... Browse Code » 
    - Some steps towards decoupling GUI and domain logic, namely, by adding
  classes Navigation and Tracker, which take some of the responsibility
  previously handled by NeuronavigationPanel.

- This is done to prepare to do some changes in the GUI, such as
  moving "Navigate" button elsewhere -- previously, it was hard
  to do due to the elements in the GUI being tightly coupled with the
  implementation of navigation.

- Also some other minor clean-up and style improvements, such as
  using more consistent and more descriptive variable names
    Olli-Pekka Kahilakoski
     

28 Jul, 2021

1 commit

  • 9d79c88d   ADD: Optional use of trigger pedal (#297) ... Browse Code » 
    * ADD: Optional use of trigger pedal

- Show the pedal status in a checkbox in the UI. Add actual
  functions for the pedal later.

- For now, hide the feature behind a feature-flag (--use-pedal)

* Review comment: Make MIDI requirements optional

Co-authored-by: Olli-Pekka Kahilakoski <olli-pekka.kahilakoski@aalto.fi>
    okahilak
     

27 Jul, 2021

1 commit

26 Jul, 2021

1 commit

20 Jul, 2021

4 commits

19 Jul, 2021

1 commit

18 Jul, 2021

2 commits

16 Jul, 2021

2 commits

15 Jul, 2021

5 commits

12 Jul, 2021

1 commit

01 Jul, 2021

1 commit

30 Jun, 2021

1 commit

  • 350e278b   Tracker optitrack python 37 (#279) ... Browse Code » 
    * add initial modifications to add optitrack tracker

* fix variable names on coordinate function of optitrack

* add transformation euler from quaternion

* fix input order of quaternions to euler_from_quaternion function

* add conversion to degrees in quaternion transformation on optitrack funcion

* fix scale

* fix coordinates order in array and modify X,Y,Z coordinate system in optitrack coordinate function

* add update cameras/frame function before Run function

* add Run function after Initialize

* removed update before Run optitrack function

* reduce Sleep_navigation variable

* add documentation to optitrack functions

* add condition to when optitrack hardware Key is not found
    sotodela
     

28 Jun, 2021

1 commit