invesalius / invesalius3

13 Apr, 2020

1 commit

dfac1497 Verifying if surface has content (vertex and cells) before trying to export to a file Browse File »

Thiago Franco de Moraes
2020-04-13 18:45:59 -0300

02 Apr, 2020

1 commit

2f686c76 wx.lib.pubsub is deprecated because it's being removed from wx so InVesalius is … ... Browse File »
```
…using pubsub directly from PubSub lib
```
Thiago Franco de Moraes
2020-04-02 15:39:29 -0300

20 Mar, 2020

1 commit

18c2bcdd Moved all cython codes to invesalius_cy Browse File »

Thiago Franco de Moraes
2020-03-20 14:35:27 -0300

20 Jan, 2020

1 commit

53c78d4f Resizing image when creating surface with low and medium quality Browse File »

Thiago Franco de Moraes
2020-01-20 18:25:19 -0300

11 Jun, 2019

1 commit

eb4d4519 ImmediateModeRenderingOn removed in last vtk (8.2) Browse File »

Thiago Franco de Moraes
2019-06-11 14:23:58 -0300

07 Jun, 2019

1 commit

0ba60020 Navigation updates (#187) ... Browse File »

* Added Camera tracker

-improved tracker.py by using const.py

* Added tracker file

* Tooltip offset

* Remove set button from navigation tab

* Reduce panel size and cleaning

* More cleaning

* Updates to code standards

* Support to the fourth FTsensor

* Support coil's marker

* Update to Pose board instead single marker

* Minor testing

* Support to NDI polaris

* invesalius sets ROMs path

* dialog to select COM port

* dialog to select COM port for polhemus devices

* Sensors ID

* cleaning wrapper export coordinates

* Polaris support working with Visor2 tools and dynamic coregistration

* dialog to choose roms files

* wrapper texts improvements

* improv coils arrows scale

* dialog to select COM for polhemus

* inv_path upgrade

* Removed camera_tracker

2019-06-07 09:34:42 -0300

26 Apr, 2019

1 commit

a042b58e Dialog "go to" scanner coordinate system (#180) ... Browse File »

* Created dialog goto sacnner coord

* Get affine matrix from project or imported image

-deals with wrongly affine shape and old inv projects

* Update status GUI

* Remove redundant sendmessage and show cross

* cleaning...

2019-04-26 14:53:21 -0300

08 Apr, 2019

1 commit

9eb75dca using wx.calllater to fix problem with opengl (#179) ... Browse File »
```
* using wx.calllater to fix problem with opengl

* handling exception at pool.terminate

* using callafter instead of calllater
```
Thiago Franco de Moraes
2019-04-08 14:40:44 -0300

12 Mar, 2019

1 commit

811f7ad5 Transform surface physical into inv coord system (#164) ... Browse File »

* Import surface transforming from physical to InV coord system

* changed defaultValue to value arg for edit marker ID

-defaultValue is not valid for wx.TextEntryDialog

* created message dialog to check the coordinate systems of the imported mesh

* Added NIfTI affine matrix to main plist invesalius project

* update dialog text

* Update transformed polydata

* Improvements

* Transform dialog works only with imported image with affine matrix

2019-03-12 15:09:34 -0300

22 Feb, 2019

1 commit

e21c88d2 Density tool canvas bublify (#171) ... Browse File »
```
* Only painting mask if DEBUG_DENSITY is true
```
Thiago Franco de Moraes
2019-02-22 08:46:43 -0300

06 Dec, 2018

1 commit

6e9eeb39 Session as dict (#156) ... Browse File »

* session as dict almost working

* writing to json

* Better last projection handling

* was not closing when didn't have config

* Not reading status from config file

* removed unused fucntion

* reading from cfg specifing the types

* reading from cfg specifing the types

* Removed unused parts

* Added a get method to session

* Using default in session

* last folder to inv3 and other files in session

* last folder to export and import stl export screenshots and open bmp folder in session

2018-12-06 14:54:35 -0200

29 Oct, 2018

1 commit

3e4ed11d Create border closed (#149) ... Browse File »

* Created a function to pad image

* taking padding in consideration when converting to vtk

* Better normals computation

* Added option to close border holes

2018-10-29 10:55:03 -0300

27 Sep, 2018

1 commit

c6026466 Cancelable surface creation (#147) closes #142 ... Browse File »

* Creating the surface using function instead of a class

* Generating and joining surface using multiprocessing

* Stripper and normal calc in surface process

* Calculating volume and area in the surface process

* Better messages in the progress dialog

* Cancel working in windows

* Using callback

* Using callback errors

* python2 doesnt have error_callback

2018-09-27 15:10:36 -0300

13 Aug, 2018

1 commit

82be8627 Using kwargs protocol from pypubsub (args1 deprecated) closes #141 (#143) ... Browse File »
```
args1 pypubsub protocol was deprecated since wxpython3. In wxpython4 it was removed. This code updates invesalius to the new pypubsub protocol (kwargs).
```
Thiago Franco de Moraes
2018-08-13 15:39:38 -0300

26 Apr, 2018

1 commit

696200d1 Python3 and wxPython4 support (also run in Python2 and wxPython3) (#135) ... Browse File »

* Starting to port to python3

* String decode error with python3

* More string decode and print

* More errors with wxpython modules

* More errors with wxpython modules and prints

* More errors with wxpython modules, prints and xrange

* wx hyperlink import errors

* print, xrange and wx import errors on tasks

* more print and xrange errors

* more print and xrange errors in dicom reader

* taskbaricon error

* print and xrange errors in surface code parts

* print and xrange errors

* metaclass in python3 using six

* StringIO to BytesIO

* Hyperlinkctrl errors

* SystemSettings errors

* AddSizer -> Add

* More hyperlink errors

* AddSpacer -> Add

* Temporary fixes

* Temporary fixes

* Creating preferences dialog

* Update checking working

* presets and other errors

* Opening inv3 proj

* Measures and gradiente widget (from manual segmentation) working

* Task thresholding, manual segmentation and watershed working

* Changed a bunch of xrange to range

* Opening dicom from command line

* Opening dicom by the gui

* Showing raycasting

* clut raycasting working

* Changing viewer volume colour working again

* Saving inv3 files

* Surface creation dialog and mask and surface colour setting

* Region growing gui working again

* Crop mask working again

* Reorient image working again

* New mask gui dialog working again

* Mask boolean operations working again

* Fill holes manually working again

* Fill holes automatically working again

* Fill holes automatically radiobox set default values

* Select parts working again

* Handling all exceptions when verifying update

* Entering in navigate mode and the navigate debug device

* Custom pseudocolor gui working again

* Opening bitmap folder working again

* Expanding watershed working again

* Resize dicom dialog gui working again

* Converted the rest of the dialogs

* Exporting mesh files

* Exporting mesh files

* Datanotebook (surface and measures) working again

* Fixed crash when closing project (because of checking an unused menu in slice viewer)

* UnIniting auimanager when closing invesalius gui

* Fill holes manually working in both wxpython 3 and 4

* Fill holes automatically working in both wxpython 3 and 4

* Crop working in both wxpython 3 and 4

* Opening bmp files working in both wxpython 3 and 4

* Colors of measures

* Changes in Neuronavigation to work with wxpython4 and python3

* Forcing surface and mask colour to always be a triple (r, g, b)

* Workaround to make InVesalius run in wxPython in Ubuntu 18.04

2018-04-26 15:44:31 -0300

12 Jan, 2018

1 commit

4d99bc51 Give the user the option to compact or not when saving the file. When the file i… ... Browse File »

…s not compacted the file is saved faster. Also, save the surface file only one time.

* Option to save compressed or not

* Improvements

* Saving only one time the surface

* Checking if surface file exists

* Incremented the format version to 1.1

* Showing an info dialog about user opening a inv3 file created by a newer invesalius format

2018-01-12 14:58:15 -0200

14 Aug, 2017

1 commit

2fade61a Add command line options for saving and exporting (#85) ... Browse File »

* Create option in app.py to import and then save the project

* Add command to import and export in STL to all available presets

* Create option to open InVesalius without gui

* Add option --export

* No-gui doing less work when creating surface

* Print on debug

* Fix missing session assignment in non-gui mode

* Add option to import every group of DICOM images

* Checking surface index exists in actors_dict before removing it

2017-08-14 11:13:58 -0300

08 Aug, 2017

1 commit

56415f0e Encoding Errors in Windows (#110) ... Browse File »

Fix the above unicode related errors:
- InVesalius was not starting in Windows with users with non ascii chars.
- Not opening dicom files from path with non ascii chars.
- Not opening bitmap files from path with non ascii chars.
- Not opening Analyze, Nifti with filename with non ascii chars.
- Not exporting surface when the path has non ascii chars.
- Not exporting picture when the path has non ascii chars.
- Not importing surface when the path has non ascii chars.
- Strange chars when showing developers and translators with non ascii chars.

To fix that errors we are convert all paths and filenames to unicode. wxPythons eases this, since it gives the paths and filenames as unicode. When using VTK to save or open a file we encode the filename to sys.getfilesystemencoding. In Windows it is necessary an additional step, convert the filename to an short representation using [win32api](http://docs.activestate.com/activepython/2.6/pywin32/win32api__GetShortPathName_meth.html).

2017-08-08 09:18:20 -0300

26 May, 2017

2 commits

046f859e Showing surface when selected in the task surface combobox Browse File »

Thiago Franco de Moraes
2017-05-26 16:37:31 -0300
4511a871 Restarting surface counting when closing project Browse File »

Thiago Franco de Moraes
2017-05-26 11:36:02 -0300

23 May, 2017

1 commit

88a97d6f Generating an unneeded file when creating surface Browse File »

Thiago Franco de Moraes
2017-05-23 14:00:54 -0300

28 Mar, 2017

1 commit

ab04cc4e Import mesh (#68) ... Browse File »

Gives invesalius the possibility to import mesh files (STL, PLY, OBJ and VTP) into a project.

* Importing mesh file to invesalius

* Reading obj mesh files

* Changed the import button icon and added a tooltip

* Added tooltips to data_notebook buttons

* Added error messages when importing surface file

2017-03-28 14:01:01 -0300

09 Nov, 2016

2 commits

33b14f6f Removed c++ casmoothing version import and better import of cython casmoothing Browse File »

Thiago Franco de Moraes
2016-11-09 14:41:53 -0200
f13a4b79 Casmoothing implemented in cython (#61) ... Browse File »
```
Implements casmoothing in Cython.

- Implements in cython
- Better handling of border vertices
```
Thiago Franco de Moraes
2016-11-09 11:03:45 -0200

21 Sep, 2016

1 commit

8d6196a1 ENH: Code restructuring, "invesalius.py" now "app.py" (#55) ... Browse File »
```
ENH: Code restructuring, invesalius.py is now app.py
```
Paulo Henrique Junqueira Amorim
2016-09-21 16:00:08 -0300

19 May, 2016

1 commit

e72e757b It wasn't showing surface when opening a inv3 proj Browse File »

Thiago Franco de Moraes
2016-05-19 12:00:35 -0300

18 May, 2016

1 commit

396a0264 Surface area (#37) ... Browse File »

* Calculating surface area

* remove prints

* Updating surface info when overwriting surface

* Calculating area when selecting greatest surface, select surface or separate all surfaces

* Copying area when duplicating surface

2016-05-18 13:30:44 -0300

05 May, 2016

1 commit

f01fc134 Removed DebugOn in surface creation filters Browse File »

Thiago Franco de Moraes
2016-05-05 14:24:09 -0300

15 Apr, 2016

1 commit

0317ac28 Adapts InVesalius to run with VTK6 (#35) ... Browse File »

* Showing the slices

* cursor was not displayed correctly

* Watershed using vtk6

* generating surface with vtk6

* generating preview in vtk6

* Showing raycasting with vtk6

* Showing measures with vtk6

* saving project

* Saving screenshots with vtk6

* Saving meshes with vtk6

* It was not showing surfaces created with greatest region, selected region and all regions filters

2016-04-15 14:58:18 -0300