invesalius / invesalius3

19 Oct, 2021

1 commit

e35fada3 FIX: transformation_matrix_to_coordinates replaced by tr.decompose_matrix ... Browse Code »
```
-dco.transformation_matrix_to_coordinates was not working. I tried 'sxyz', 'szyx', 'rxyz', 'rzyx'. All are returning the same values.
```
Renan
2021-10-19 14:01:46 +0300

18 Oct, 2021

1 commit

87bb8b91 Merge branch 'master' into multimodal_tracking ... Browse Code »
```
# Conflicts:
#	invesalius/gui/task_navigator.py
```
Renan
2021-10-18 09:39:30 +0300

17 Oct, 2021

1 commit

9823122a FIX: Error raised if 3D not created before when adding a peeling surface (#387) Browse Code »

Victor Hugo Souza
2021-10-17 22:56:22 -0300

15 Oct, 2021

2 commits

55cc5637 FIX: marker labels now correctly loaded from files (#388) Browse Code »

Andrey Zhdanov
2021-10-15 18:21:08 -0300
392671f2 ENH: robot documentation Browse Code »

Renan
2021-10-15 16:26:24 +0300

14 Oct, 2021

5 commits

615280da FIX: Save affine in project and refactor instances of affine creation in OtherProjects (#386) Browse Code »

Victor Hugo Souza
2021-10-14 15:25:39 -0300
1239b41c FIX: Add pixel spacing in inv to voxel coordinate transformation (#385) ... Browse Code »
```
* FIX: Add pixel spacing in inv to voxel coordinate transformation

* FIX: Apply the conversion to the unitary voxel shift to mantain the range
```
Victor Hugo Souza
2021-10-14 09:51:40 -0300
6e48b67a Merge pull request #383 from andreyzhd/add-comment-tag-markers-magick_string ... Browse Code »
```
Markers file magic string is now prepended with two hashtags.
```
Victor Hugo Souza
2021-10-14 13:19:01 +0300
c21b81c5 ENH: more variable name refractor ... Browse Code »
```
-added opencv to optional-requirements
```
Renan
2021-10-14 11:33:41 +0300
06dd9de7 ENH: code cleaning and standardization Browse Code »

Renan
2021-10-14 09:57:08 +0300

12 Oct, 2021

8 commits

c944ccf5 Using get_LUT_value from imagedata_utils in styles.py Browse Code »

Thiago Franco de Moraes
2021-10-12 19:21:10 -0300
7c2bd0b8 Using get_LUT_value from imagedata_utils in brain segmentation Browse Code »

Thiago Franco de Moraes
2021-10-12 19:18:40 -0300
e33eeb5d ENH: changed the robot target computation to marker creation Browse Code »

Renan
2021-10-12 13:31:55 +0300
29d9c7a1 Markers file magic string is now prepended with two hashtags. ... Browse Code »
```
Thus it will be treated as a comment by parsers that use
hashtags for comments.
```
Andrey Zhdanov
2021-10-12 13:25:09 +0300
3b9c6b57 MOD: Enable/Disable "Send target to robot" button ... Browse Code »
```
-Enable "Send target to robot" button only if tracker is robot, if navigation is on and if target is not none
```
Renan
2021-10-12 11:36:47 +0300
01cc68f0 ADD: reset robot processing Browse Code »

Renan
2021-10-12 10:45:16 +0300
430847f0 MOD: separated robot target from markers Browse Code »

Renan
2021-10-12 10:37:45 +0300
8c526577 ENH: more name refractor Browse Code »

Renan
2021-10-12 08:12:02 +0300

11 Oct, 2021

5 commits

839d45c1 ENH: variable names refractored Browse Code »

Renan
2021-10-11 13:22:27 +0300
b6ae3404 Merge branch 'master' into multimodal_tracking Browse Code »

Renan
2021-10-11 02:42:46 -0300
2a9da902 Merge pull request #376 from okahilak/add-script-for-sending-events-to-invesalius ... Browse Code »
```
ADD: Script for sending events to InVesalius via Socket.IO
```
Victor Hugo Souza
2021-10-11 08:40:33 +0300
75cc013e Cleaning and fixing merge Browse Code »

Renan
2021-10-11 08:39:49 +0300
310b5d08 Merge pull request #375 from okahilak/allow-selecting-baud-rate-for-serial-port ... Browse Code »
```
MOD: Allow selecting baud rate for serial port communication
```
Victor Hugo Souza
2021-10-11 08:38:15 +0300

08 Oct, 2021

12 commits

a406f61e Add pytorch backend to brain segmentation (#365) ... Browse Code »

* added pytorch to requirements.txt and showing in GUI

* segmenting using pytorch

* Remove debug prints

* Added an function to download a file and save it localy

* Downloading the weight using the developed function to download file

2021-10-08 16:16:53 -0300

37c0026b Remove MTC markers Browse Code »

Renan
2021-10-08 18:20:24 +0300
65d1a237 Review comment: Move added requirements to optional-requirements.txt Browse Code »

Olli-Pekka Kahilakoski
2021-10-08 17:46:58 +0300
521bb7ff ENH: refractor Browse Code »

Renan
2021-10-08 17:44:18 +0300
eb4c656f Review comment: Use non-configurable baud rate for serial port for now ... Browse Code »
```
However, ensure that the configurable baud rate can be implemented back
easily if needed (namely, by reverting this commit).
```
Olli-Pekka Kahilakoski
2021-10-08 17:39:54 +0300
7e5fe92b FIX: minor adjustments Browse Code »

Renan
2021-10-08 17:19:16 +0300
b1968330 Merge branch 'master' into multimodal_tracking ... Browse Code »
```
# Conflicts:
#	invesalius/gui/task_navigator.py
```
Renan
2021-10-08 16:38:16 +0300
a07dc035 ADD: Script for sending events to InVesalius via Socket.IO Browse Code »

Olli-Pekka Kahilakoski
2021-10-08 13:56:10 +0300
0065134e ADD: stop robot when navigation is off ... Browse Code »
```
-cleaning
```
Renan
2021-10-08 13:31:32 +0300

5acf7461 MOD: Allow selecting baud rate for serial port communication ... Browse Code »

Other changes:

- Disallow not selecting COM port in COM port selection dialog by
  defaulting to the first COM port in the list. Previously, it was
  possible to pass an empty string as the COM port by not making
  the selection.

- When the "Serial port" checkbox is pressed and the user presses
  "Cancel" in the dialog that is opened, uncheck the "Serial port" checkbox
  instead of keeping it checked.

- Be explicit about if the serial port is in use or not, instead of inferring
  it from the COM port variable being set or not.

- Pass the serial port parameters (COM port, baud rate) directly to the
  Navigation class, instead of passing them through NeuronavigationPanel.

- Minor improvements to style and naming of the variables.

2021-10-08 12:35:07 +0300

0ff58d76 ENH: Send target to robot just available when tracker is ROBOT Browse Code »

Renan
2021-10-08 11:35:08 +0300
16728827 FIX: remove sleep from robot thread Browse Code »

Renan
2021-10-08 11:15:35 +0300

07 Oct, 2021

5 commits

9460b9cd Added very basic support for sessions (#374) ... Browse Code »
```
Markers code made more robust
Minor fixes
UI for sessions is quite messy, needs polishing
```
Andrey Zhdanov
2021-10-07 23:13:05 -0300
78997860 FIX: merge adjustments Browse Code »

Renan
2021-10-07 21:12:24 +0300
db6e8b0d Merge pull request #373 from okahilak/fix-stop-navigation-when-serial-port-connection-is-none ... Browse Code »
```
FIX: StopNavigation function when serial port connection has not been formed
```
Victor Hugo Souza
2021-10-07 18:04:44 +0300

aa4f4cad FIX: StopNavigation function when serial port connection has not been formed ... Browse Code »

StopNavigation function is called, e.g., when InVesalius is quitted. If the
serial port was enabled in the UI but navigation had not been started, it
previously caused an error because serial_port_connection variable was None.

2021-10-07 17:04:32 +0300

4f539b46 Merge pull request #372 from okahilak/fix-using-pedal-for-setting-fiducials ... Browse Code »
```
FIX: Using pedal for setting fiducials
```
Victor Hugo Souza
2021-10-07 16:09:44 +0300