26 Sep, 2016
1 commit
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Close holes 2D or 3D automatically with size <= max_size Ctrl-z and Ctrl-y is working
21 Sep, 2016
1 commit
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ENH: Code restructuring, invesalius.py is now app.py
19 Sep, 2016
1 commit
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Close button on remove parts, fill holes and region growing segmentation. Cancel and Ok button on the select parts.
15 Sep, 2016
1 commit
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Tool for selecting the region of interest using a box.
13 Sep, 2016
1 commit
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Adds floodfill segmentation to InVesalius. Its possible to segment using an given threshold or a dynamic threshold. The dynamic threshold is based on the value pointed by the user and a deviation (given by the user). Also, it's possible to apply an WW&Wl before the segmentation.
25 Aug, 2016
1 commit
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* Starting to select part to new mask * Showing the selected part * Improvement * Better create_new_mask method and doc * Removed the old method to add new mask * Better method to get the position of the clicked voxel * Option to deselect part * Not setting new mask as current in task_slice * Strip white spaces and better doc in Mask create_mask class * Showing dialog * Appending the mask only after the proccess is over * Better gui
24 Aug, 2016
1 commit
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* ADD: Added slice interpolation optioni into menubar * ADD: Added slice interpolation optioni into menubar * ADD: Added interpolation into preferences
19 Aug, 2016
1 commit
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These tools use floodfill implemented using Cython c++.
11 Aug, 2016
1 commit
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* FIX: Error in bitmap reader in Win32 * FIX: Fixed error in window and level * FIX: Fixed problem with inverted slices and uint16 images * FIX: Fixed problem with resample * ENH: Reader load spacing from txt file info * ENH: Dialog to show that have images with different size * ENH; Enhancemets to sort files in folder * FIX: Changed message when are not bitmap files * ENH: Added uCT label in menu * ENH: Enhancements in bitmap panel * NEW: Delete image in InVesalius import panel * ENH: Enhancements in delete window * ENH: Enhancements in import bitmap panel * ENH: Enhancements to delete bmp in import bitmap panel * ENH: Added black slice when delete last slice
08 Jul, 2016
1 commit
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ADD: This branch is for InVesalius to read BMP, TIF, JPEG and PNG files.
16 May, 2016
1 commit
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Image reorientation * Added the code to reorient image and numpy styles * Starting to show reoriented image * Styles * Showing the cross * Dragging the center of rotation * Improvements * It's already rotating * Improvements * Rotating using quaternion * Updating all orientations only when the user release the mouse button * Updated the setup.py to compile in mac * Showing angles in a dialog * Almost done * Improvements * Cythonize in windows * Avoiding zero division in vector normalize * Avoiding zero division in vector normalize * Showing and hidding mask when using reorient image * Closing reorient image dialog when out of reorient style * Added __init__
05 Jun, 2015
1 commit
03 Jun, 2015
1 commit
02 Jun, 2015
1 commit
01 Jun, 2015
1 commit
28 May, 2015
2 commits
25 May, 2015
2 commits
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It was necessary to change from wx.toolbar to auitoolbar because in macosx it is not possible to untoggle a toggle button when using a wx.toobar inside a aui. Some tests to make toolbar toggle work in mac Added more toolbars as auitoolbar A Refresh after untoggle all A Refresh after untoggle all Converted LayoutToolbar to auitoolbar Converted HistoryToolbar to auitoolbar Converted ProjectToolbat to auitoolbar deleted mask icon changed the style of toolbar to not use gradient
07 May, 2015
1 commit
06 May, 2015
4 commits
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Fixed problems with sizers, colors ans panel sizes. Created functions to calculate panel sizes inside foldpanelbar Showing the left-down panel where masks and surfaces info are showed applyied the patches from Olly Betts to run in wxpython3 The gradient widget is working The comboboxes from mask properties are working now. The problem was that combobox must not empty. Surface task is working again Putting combobox thresholds presets in a new line putting the import pil inside a try except expanding the label 'set predefined or manual threshold' showing the buttons when importing a dicom better layout to task_slice the size of the data_notebook the size of the buttons inside of data_notebook the size of the volume viewer icons solved the problem with position of statusbar using idle event Solved the problem with left icons Added Olly Betts as contributor Added Olly Betts as contributor Calculating best size to data notebook Removed the background colors Better sizing, but not completed. Tests data notebook with better size Better sizings Removed some unused codes Fixed the problems with backgroundcolour from statictext in the taskbar better spacings Align button "Create surface" to the right
20 Apr, 2015
1 commit
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Implements boolean operations to masks. The user has a gui to choose the masks and the operation (union, xor, diff, intersection). Then InVesalius creates a new mask with the result of the operation. Doing some boolean operations Added Intesection and XOR There was an error in the bool diff operation Gui improvements changed "xor" to "exclusive disjuction" added the icons Improvements to the boolean operation dialog Added a menu to mask operations (booleans is there)
02 Mar, 2015
1 commit
23 Feb, 2015
1 commit
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This reverts commit 80f95c3208f09123327b436808e244413b2963a2.
12 Feb, 2015
1 commit
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Improvement of all navigation modules, including MicronTracker spatial tracker support and NIFTI image type import.
23 Jun, 2014
1 commit
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Watershed is a very useful algorithm to segment brain, for example. The implementation used is from scikit image. Before the segmentation, a ww&wl is applied and a morphological gradient is applied, to extract the borders of the image. It can be used to 2D slices or to all slices (via expand button). It was created a new slice interaction style: WaterShedInteractorStyle. Starting to using watershed Added suport to erase a mark Applying threshold before starting watershed mode Watershed 3D (only markers from axial) Watershed 3D Marking the mask as edited when using watershed tool Fixed the problem of not deleting watershed interactor style Not flushing buffer (it's not necessary) Not hidding wx's cursor when marking to watershed Removed the vtk colour part from watershed style Removed the vtk colour part from watershed style micro-optimization Removing aux matrix when opening a new dicom dir not showing watershed markers when mask is hidden Only doing watershed when user marks back and foreground. Reloading all mask slice when watershed is expanded showing (hidding) watershed marks when enabled (disabled) cleaning undo redo when watershed is applied (TODO create undo redo to watershed) Interface to select watershed operation
09 Apr, 2014
1 commit
17 Dec, 2013
1 commit
16 Dec, 2013
1 commit
04 Mar, 2013
3 commits
15 Oct, 2012
1 commit
11 Oct, 2012
1 commit
10 Oct, 2012
1 commit
14 Sep, 2012
2 commits
