11 Aug, 2016

1 commit

  • d4ff9146   Micro ct improvements (#45) ... Browse File » 
    * FIX: Error in bitmap reader in Win32

* FIX: Fixed error in window and level

* FIX: Fixed problem with inverted slices and uint16 images

* FIX: Fixed problem with resample

* ENH: Reader load spacing from txt file info

* ENH: Dialog to show that have images with different size

* ENH; Enhancemets to sort files in folder

* FIX: Changed message when are not bitmap files

* ENH: Added uCT label in menu

* ENH: Enhancements in bitmap panel

* NEW: Delete image in InVesalius import panel

* ENH: Enhancements in delete window

* ENH: Enhancements in import bitmap panel

* ENH: Enhancements to delete bmp in import bitmap panel

* ENH: Added black slice when delete last slice
    Paulo Henrique Junqueira Amorim
     

08 Jul, 2016

1 commit

16 May, 2016

1 commit

  • 68b4d2a5   Image Reorientation (#36) ... Browse File » 
    Image reorientation

* Added the code to reorient image and numpy styles

* Starting to show reoriented image

* Styles

* Showing the cross

* Dragging the center of rotation

* Improvements

* It's already rotating

* Improvements

* Rotating using quaternion

* Updating all orientations only when the user release the mouse button

* Updated the setup.py to compile in mac

* Showing angles in a dialog

* Almost done

* Improvements

* Cythonize in windows

* Avoiding zero division in vector normalize

* Avoiding zero division in vector normalize

* Showing and hidding mask when using reorient image

* Closing reorient image dialog when out of reorient style

* Added __init__
    Thiago Franco de Moraes
     

16 Jun, 2015

1 commit

02 Jun, 2015

1 commit

25 May, 2015

1 commit

20 Apr, 2015

1 commit

  • 6cf4c91a   Adds boolean operation to mask (union, xor, diff, intersection) ... Browse File » 
    Implements boolean operations to masks. The user has a gui to choose the
masks and the operation (union, xor, diff, intersection). Then
InVesalius creates a new mask with the result of the operation.

Doing some boolean operations

Added Intesection and XOR

There was an error in the bool diff operation

Gui improvements

changed "xor" to "exclusive disjuction"

added the icons

Improvements to the boolean operation dialog

Added a menu to mask operations (booleans is there)
    Thiago Franco de Moraes
     

02 Mar, 2015

1 commit

26 Feb, 2015

1 commit

23 Feb, 2015

3 commits

12 Feb, 2015

1 commit

22 Aug, 2014

1 commit

23 Jun, 2014

1 commit

  • c180da8d   This implements the segmentation watershed algorithm to InVesalius. ... Browse File » 
    Watershed is a very useful algorithm to segment brain, for example. The
implementation used is from scikit image. Before the segmentation, a
ww&wl is applied and a morphological gradient is applied, to extract the
borders of the image. It can be used to 2D slices or to all slices (via
expand button). It was created a new slice interaction style: WaterShedInteractorStyle.

Starting to using watershed

Added suport to erase a mark

Applying threshold before starting watershed mode

Watershed 3D (only markers from axial)

Watershed 3D

Marking the mask as edited when using watershed tool

Fixed the problem of not deleting watershed interactor style

Not flushing buffer (it's not necessary)

Not hidding wx's cursor when marking to watershed

Removed the vtk colour part from watershed style

Removed the vtk colour part from watershed style

micro-optimization

Removing aux matrix when opening a new dicom dir

not showing watershed markers when mask is hidden

Only doing watershed when user marks back and foreground.

Reloading all mask slice when watershed is expanded

showing (hidding) watershed marks when enabled (disabled)

cleaning undo redo when watershed is applied (TODO create undo redo to watershed)

Interface to select watershed operation
    Thiago Franco de Moraes
     

07 Apr, 2014

1 commit

17 Dec, 2013

1 commit

07 Aug, 2013

1 commit

18 Apr, 2013

1 commit

  • 855d18d9   Makes the measure mark proportional to image spacing ... Browse File » 
    * Added the parameter radius "Add measurement point" pubsub message. This
  parameter is proportional the image spacing.
* Added PROP_MEASURE to constants.py. This constant is used to set the
  proportion the image spacing.

The measure mark is proportional to the image spacing

Loading measures with circlerepresentation proportional to the image spacing

Adding measures in polydata with circlerepresentation proportional to the image spacing

Added PROP_MEASURE to constants.py
    Thiago Franco de Moraes
     

04 Mar, 2013

1 commit

25 Feb, 2013

1 commit

21 Sep, 2012

1 commit

17 Sep, 2012

1 commit

14 Sep, 2012

3 commits

12 Sep, 2012

3 commits

31 Aug, 2012

1 commit

10 Aug, 2012

1 commit

08 Aug, 2012

1 commit

27 Jul, 2012

1 commit

26 Jun, 2012

1 commit

  • 295c16a0   The code fix gantry tilt was rewrite to use the numpy arrays. ... Browse File » 
    The old code to fix gantry tilt was not working with the memmapped
numpy array. That was rewrite so to work with memmapped numpy array
using scipy.ndimage.shift. In
the new code I'm not recalculating the new z-spacing anymore.

Squashed commit of the following:

commit 574b9b042bc6a8585efcdb4fd12a65c4b43e0840
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Tue Jun 26 15:19:08 2012 -0300

    Removed the code to calculate a new spacing, it's not necessary

commit 4f91d993995130618275c7aeede4f6502ae66e0c
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Tue Jun 26 14:44:22 2012 -0300

    Not rounding spacing values to 2 decimal houses anymore

commit 3313175cdc2a2c22c04bf2d8545c50ede86ced66
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Mon Jun 25 16:50:56 2012 -0300

    Testing not applying the translate_coef

commit 363c1ce0bcb2860c4a764201ea5525c865d439dc
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Mon Jun 25 13:22:08 2012 -0300

    Changing spacing values when fixing gantry tilt

commit 30785e8ebb945250e45a8b8768253b196112a801
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Tue Jun 12 15:32:50 2012 -0300

    Using scipy.ndimage.shift to gantry tilt correction
    tfmoraes
     

27 Mar, 2012

1 commit

23 Mar, 2012

1 commit

21 Mar, 2012

1 commit

20 Mar, 2012

1 commit

  • 00952d8a   Generating surface again, from binary (if the mask was edited) or the original. ... Browse File » 
    When the user tries to generates a surface from a edited mask, the user
is aske about the method to generate the surface: Binary, Context aware
smoothing or invesalius3.b2

Squashed commit of the following:

commit 480c88b680a9d79c977d3a8b81b9b25114dad43b
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Tue Mar 20 10:56:41 2012 -0300

    Not saving the project when a new case is opened

commit 1233e37982783412fd1a092820ddb55f60c7df79
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Tue Mar 20 10:51:04 2012 -0300

    Generating surface from edited masks, the user can select to use the context aware smoothing or be a binary

commit e722ea910db2931b866dfa647fcb5cc3a80d5675
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Tue Mar 20 10:47:10 2012 -0300

    Added a new dialog related to the generation surface whose mask was edited
    tfmoraes
     

28 Dec, 2011

1 commit

18 May, 2011

1 commit