Thiago Franco de Moraes / invesalius3

30 May, 2017

1 commit

9d673a46 Forcing matrix shape to int when resizing Browse File »

Thiago Franco de Moraes
2017-05-30 14:27:16 -0300

03 Apr, 2017

1 commit

828f2a21 Coronal stacking was incorrect Browse File »

Thiago Franco de Moraes
2017-04-03 09:47:59 -0300

02 Feb, 2017

1 commit

bed72ec3 Neuronavigation module update and improvement (#65) ... Browse File »

Neuronavigation module updatings and improvements

* Revert "Revert "ENH: Update neuronavigator modules""

This reverts commit 2ecc37998e18c762b82413314fcf75d1491ca1be.

* ENH: Update corregistration comments.

* ENH: Restructuring InVesalius Navigator spatial tracker communication.

* ENH: Restructuring the spatial tracker communication.

* ENH: Updating navigation tools.

* Code refactoring for navigator development

- Delete previous git mistakes while tracking files
- Code fix to run invesalius navigator and start code refactoring

* Update navigator GUI
- Improvement on manipulation of markers creation and edition
- Buttons and panels size adjustment

* Improvement on trackers connection
- MicronTracker supports dynamic reference

* VTK6 adjustments - SetInputData
-Using SetInputData instead SetInput

* Update Create Markers and fix sphere creation

- Improvement on manipulation of markers creation and edition
- Using SetInputConnection(GetOutputPort()) instead SetInputData(GetOutput())

* GUI update and creation of fiducial markers

* Fix Fiducial Markers

* Update - Load Fiducial points using "Load Markers"

* Fix Trackers (PLH) and Navigation

* Update ComboBox and trackers connection

* Full support for Analyze, NIfTI and PAR/REC images
- Support for Analyze, NIfTI, Compressed NIfTI and PAR/REC images
- Support for Analyze limited due to lack of orientation info
- Image orientation standardized to RAS+

* ComboBox Update
- Set "Select tracker" when the tracker is not connected

* Fixed usp-navegador version
- Changed GetValue to GetValue()
- Changed SetInputData to SetInput
- Changed SetInputConnection to SetInputData

* Manually merged rmatsuda master_merge branch to usp-navegador
- Improved navigation GUI
- Improved navigation control of spatial trackers
- Added management of makers creation
- Added dialogs for better neuronavigation control

* Added TMS trigger and enhanced tracker device control
- Serial communication to detect TMS trigger
- Added MicronTracker calibration and marker files
- Enhanced tracker manipulation

* Navigation cleaning and improvements in viewer volume
- Cleaned unecessary navigation functions
- Optimized volume camera and ball reference positions
- Enhanced markers manipulation
- Removed blank lines

* Improved task_navigator GUI
- Better code using GridBagSizer
- Removed useless code

* Improvement in coordinates handling for neuronavigation

* Significant refactor of navigation pipeline
- Improvement in navigation panel controls
- Refactoring of volume and slice updates
- Improvement in communication with tracking devices
- Refactoring of entire navigation pipeline

* Improved colour and size of navigation markers

* Added trigger and volume camera controls
- Reformulated markers creation
- Created control of volume camera
- Control for external trigger marker creation

* Minor code adjustments

* GUI improvements

* Minor code optimization
- Improved load markers

2017-02-02 11:17:10 -0200

21 Sep, 2016

1 commit

8d6196a1 ENH: Code restructuring, "invesalius.py" now "app.py" (#55) ... Browse File »
```
ENH: Code restructuring, invesalius.py is now app.py
```
Paulo Henrique Junqueira Amorim
2016-09-21 16:00:08 -0300

11 Aug, 2016

1 commit

d4ff9146 Micro ct improvements (#45) ... Browse File »

* FIX: Error in bitmap reader in Win32

* FIX: Fixed error in window and level

* FIX: Fixed problem with inverted slices and uint16 images

* FIX: Fixed problem with resample

* ENH: Reader load spacing from txt file info

* ENH: Dialog to show that have images with different size

* ENH; Enhancemets to sort files in folder

* FIX: Changed message when are not bitmap files

* ENH: Added uCT label in menu

* ENH: Enhancements in bitmap panel

* NEW: Delete image in InVesalius import panel

* ENH: Enhancements in delete window

* ENH: Enhancements in import bitmap panel

* ENH: Enhancements to delete bmp in import bitmap panel

* ENH: Added black slice when delete last slice

2016-08-11 13:50:53 -0300

08 Jul, 2016

1 commit

794ea503 Micro ct (#40) ... Browse File »
```
ADD: This branch is for InVesalius to read BMP, TIF, JPEG and PNG files.
```
Paulo Henrique Junqueira Amorim
2016-07-08 15:39:51 -0300

04 May, 2016

1 commit

20b284a7 Fixed ball reference and image resample Browse File »

Thiago Franco de Moraes
2016-05-04 16:34:28 -0300

23 Feb, 2015

1 commit

2ecc3799 Revert "ENH: Update neuronavigator modules" ... Browse File »
```
This reverts commit 80f95c3208f09123327b436808e244413b2963a2.
```
vhosouza
2015-02-23 15:29:38 -0300

12 Feb, 2015

1 commit

80f95c32 ENH: Update neuronavigator modules ... Browse File »
```
Improvement of all navigation modules, including MicronTracker spatial
tracker support and NIFTI image type import.
```
vhosouza
2015-02-12 14:38:54 -0200

31 Aug, 2012

1 commit

4cca86b9 ENH: Added interface to image reduction Browse File »

Paulo Henrique Junqueira Amorim
2012-08-31 19:37:34 +0000

27 Jul, 2012

1 commit

56f7a128 Adapted camera positions to coronal and sagital cases, and added the option to flip image Browse File »

tfmoraes
2012-07-27 12:56:45 +0000

26 Jun, 2012

1 commit

295c16a0 The code fix gantry tilt was rewrite to use the numpy arrays. ... Browse File »

The old code to fix gantry tilt was not working with the memmapped
numpy array. That was rewrite so to work with memmapped numpy array
using scipy.ndimage.shift. In
the new code I'm not recalculating the new z-spacing anymore.

Squashed commit of the following:

commit 574b9b042bc6a8585efcdb4fd12a65c4b43e0840
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Tue Jun 26 15:19:08 2012 -0300

    Removed the code to calculate a new spacing, it's not necessary

commit 4f91d993995130618275c7aeede4f6502ae66e0c
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Tue Jun 26 14:44:22 2012 -0300

    Not rounding spacing values to 2 decimal houses anymore

commit 3313175cdc2a2c22c04bf2d8545c50ede86ced66
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Mon Jun 25 16:50:56 2012 -0300

    Testing not applying the translate_coef

commit 363c1ce0bcb2860c4a764201ea5525c865d439dc
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Mon Jun 25 13:22:08 2012 -0300

    Changing spacing values when fixing gantry tilt

commit 30785e8ebb945250e45a8b8768253b196112a801
Author: Thiago Franco de Moraes <totonixsame@gmail.com>
Date:   Tue Jun 12 15:32:50 2012 -0300

    Using scipy.ndimage.shift to gantry tilt correction

2012-06-26 18:24:48 +0000

27 Mar, 2012

1 commit

903ccf9e ENH: Changed call of the Pubsub because wxPython 2.8.12.1. "ps.Pusub(). to Pusub… ... Browse File »
```
…." and "import wx.lib.pubsub as ps" to "from wx.lib.pubsub import pub as Publisher", tested in windows and ubuntu 11.10.
```
Paulo Henrique Junqueira Amorim
2012-03-27 15:44:05 +0000

28 Dec, 2011

1 commit

a21f0c37 Saving inv3 Browse File »

tfmoraes
2011-12-28 16:19:14 +0000

01 Nov, 2011

1 commit

a2350755 Improved cursor_actors, better handlings and more accurate Browse File »

tfmoraes
2011-11-01 13:25:45 +0000

30 May, 2011

1 commit

a061025c FIX: Fixed error in generate surface in the win32 and win64 ticket #271 Browse File »

Paulo Henrique Junqueira Amorim
2011-05-30 19:42:42 +0000

06 Apr, 2011

1 commit

6dc42bf8 Handling orientations in analyze files and storing it in memmap Browse File »

tfmoraes
2011-04-06 20:00:05 +0000

23 Mar, 2011

1 commit

69aa6af4 Working with the last version of gdcm Browse File »

tfmoraes
2011-03-23 17:38:48 +0000

16 Dec, 2010

1 commit

8fa8e038 ENH: Returning scalar range on creating memmap from dicom Browse File »

tfmoraes
2010-12-16 18:02:54 +0000

06 Dec, 2010

1 commit

a724a203 ENH: Generating surface using multiprocessing and with memmap Browse File »

tfmoraes
2010-12-06 16:51:54 +0000

03 Dec, 2010

2 commits

f8f2ab10 FIX: Problem with dialog in random cases Browse File »

Paulo Henrique Junqueira Amorim
2010-12-03 18:26:30 +0000
4486c206 ENH: Returned dialog while generating MPR Browse File »

Paulo Henrique Junqueira Amorim
2010-12-03 17:31:50 +0000

01 Dec, 2010

1 commit

ceea67fa ENH: Optimize importation of DICOM files Browse File »

Paulo Henrique Junqueira Amorim
2010-12-01 10:31:56 +0000

21 Oct, 2010

1 commit

58534ceb ENH: Ported analyze reader to new way to handle slices (using memmap). ... Browse File »

* Nibabel already works with memmap, it was only necessary to reorient the
* slices because we works with number of slices as the first dimension from
* memmap matrix, nibabel uses the first dimension the image width.

2010-10-21 13:21:37 +0000

18 Oct, 2010

1 commit

f7a5655a ENH: Handle sagittal and coronal images. ... Browse File »

* Handling sagittal and coronal (not tested) images. Sagittal and coronal
 images are stored in memmap matrix as axial doing insertion acording to
 orientation;
* Axial, sagittal and coronal are showed in its correspondent plane.

2010-10-18 18:11:05 +0000

08 Oct, 2010

2 commits

ff5ac193 ENH: Using the right shape in memmap Browse File »

tfmoraes
2010-10-08 18:37:33 +0000

e53432ed ENH: Using vtkgdcmImageReader instead gdcm.ImageReader. ... Browse File »

Because it was necessary to do some extra works, like some math to calculate the hounsfield units, now we are using vtkgdcmImageReader instead of gdcm.ImageReader.

2010-10-08 18:01:51 +0000

06 Oct, 2010

1 commit

1d943e8d ENH: Loading images from memmap in viewer slices without the masks. ... Browse File »

* The images are being loaded in viewer slices without the masks;
* The imagedata with all slices are being loaded too, but not showed
* The images are loaded with a hardcoded WL & WW

2010-10-06 16:59:19 +0000