26 Aug, 2021
1 commit
25 Aug, 2021
3 commits
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- The correct way to ask if serial port is enabled is to use SerialPortEnabled function in Navigation class. - While at it, remove the unused Enabled function from SerialPortConnection class.
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- Do more specific error handling in SerialPortConnection class, distinguishing between the error caused by the queue becoming full from the error caused by reading from or writing into the serial port. - Also, add a comment explaining why additional sleeping is needed inside the thread in SerialPortConnection class.
24 Aug, 2021
1 commit
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* CLP: Clean up naming in task_navigator.py Namely, be more specific about the type of trigger input (in this case, the serial port), as nowadays the MIDI input can be used for triggering, as well. * CLP: Remove unused variable 'trigger' from Navigation class * CLP: More clean-up related to serial port communication - Change invesalius.data.trigger to invesalius.data.serial_port_connection - Rename the class TriggerNew to SerialPortConnection - Remove the old, unused Trigger class - Rename a couple of variables in SerialPortConnection class - Replace the incorrect docstring for SerialPortConnection class with a brief but more accurate docstring. * CLP: More clean-up in SerialPortConnection - Remove commented out code - Remove some blank lines from function definitions - Do not import sleep from time library, but instead use time.sleep * MOD: Allow selecting COM port when enabling serial port communication
23 Aug, 2021
1 commit
20 Aug, 2021
2 commits
19 Aug, 2021
7 commits
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- New mkss file format with better structure - Create, save, load markers updated The changes mostly courtesy of vhosouza; I rebased them on top of the current main branch and did a few further changes.
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* modify arrow properties, replace orientation disk with torus * Remove ball actor * Change coil angle arrow projection constant to 5 degrees * Add removing arrow and disk used for coil projection when removing the peel * Modify Add_Torus function to be able to modify the color, Modify colors for arrow and torus, Modify size of coil projected arrow * Modify torus color * Modify arrow color * Undo changes done in commit 5fc6fd12b56e42a22571246c025256c30600deaf
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Change originally courtesy of vhosouza.
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Change originally courtesy of vhosouza.
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Change originally courtesy of vhosouza.
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Change originally courtesy of vhosouza.
18 Aug, 2021
6 commits
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- Removed unused functions and code Co-authored-by: Victor Hugo Souza <victor.souza@aalto.fi>
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- The Panel layout differs depending on if the pedal is in use or not, therefore the pedal needs to be initialized before the panel is created.
17 Aug, 2021
4 commits
16 Aug, 2021
1 commit
12 Aug, 2021
1 commit
09 Aug, 2021
1 commit
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* add add_object_orientation_disk and add_addobjectArrow functions, add orientation disk and projection arrow actors * add getCenter and getNormal functions, create locator and add self.peel_centers and self.peel_normals variables, add to calculate normals and centers when calling getPeelActor (new peel) * add GetPeelCenters and Initlocator_viewer and corresponding publisher call * add in OnLinkBrain and TractographyPanel class (OnSelectPeelingDepth) call to get peel centers and normals and initiator) * remove print on GetPeelCenters and Initlocator_viewer * add objectArrowlocation to calculate coil norms and directions * Add UpdateObjectArrowOrientation and Getcellintersection - getcellintersection function calculates the intersection between the coil normal and the peel center -calculates the angle between the coil normal and the normal of the center of the intersected cell -shows the coil projected with arrow and disk -Color of the disk and arrow change according to the value of the angle between the normal of the coil and the peel center mesh intersected. -updateobjectarroworientation is used to show and update the position of the projected arrow and disk * add comments, removed not used code on class def, modify currentPeel as local variable * modify getPeelActor removing input currentPeel * add affine_vtk matrix as input to getPeelActor, add change position of curent peel * add case when not intersection found in getcellintersection function * add remove arrow and disk actor only when intersecting with the peel * add comments to getcellintersection function, remove TODO * add comment to getcellintersection * add transformpeelposition function * add setvisibility to arrow and disk actor on OnNavigationStatus * add tangent lines for debuggint at getcellintersection function * add coil_dir from coordinates from tracker to objectArrowlocation * modify visibility of disk and coil projection arrow, to be shown when coil is not shown * comment tangent lines for debuggin on getcellintersection * modify names of functions to invesalius naming convention * correct mispelling error when calling GetCellIntersection * add angle threshold for projectio arrow in constansts * add angle threshold for arrow projection in constants * change size of disk and arrow in coil projection * add normal lines for debugging arrow projection * Modify function names to invensalius convention * add condition for track if peel is loaded or not * fix removing arrow and disk projection when distance is larger than set value, removing normal lines for debugging * clean comments * add self.peel_loaded to vis_components * Modify UpdatePeelVisualization to pass peel_loaded from navigation class * change color disk and arrow
06 Aug, 2021
1 commit
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-ENH: stop navigation to perform ICP -FIX: remove ICP thread to avoid vtk freezing
05 Aug, 2021
2 commits
04 Aug, 2021
3 commits
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MOD: Refactor task_navigator.py
03 Aug, 2021
2 commits
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Revert "FIX: Locale problem crashing with Windows 10 and certain locales (#283)"
02 Aug, 2021
1 commit
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This reverts commit 30ae50b1b29bb0d9c331971f0190fe7b5332e12b.
29 Jul, 2021
3 commits
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the renderer.
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* ADD: Remote control via Socket.IO - Add a command line option (--remote-host) to connect to a remote server via Socket.IO. - Add a hook to send all internal events to the remote server using `from_neuronavigation` event. - Add a Socket.IO event listener for `to_neuronavigation` events, send publish those events internally. * FIX: WxPython-UI modifying Socket.IO messages not working * FIX: Allow sending message to neuronavigation with data None * Review comments: Create RemoteControl class under invesalius/net * Review comments: Move invesalius_pubsub dir to invesalius/pubsub * ADD: Python modules needed by Socket.IO to requirements.txt * MOD: Move python-socketio to optional-requirements.txt - Also, change the requirement name from python-socketio to python-socketio[client], causing all dependencies needed by the Socket.IO client (e.g., requests) to be installed - Due to that, remove explicit 'requests' library from the requirements Co-authored-by: Olli-Pekka Kahilakoski <olli-pekka.kahilakoski@aalto.fi>
