Download as
Browse Code »

Commit ea7731aca9d1920690effca7c3d4cf5495348f56

Authored by Thiago Franco de Moraes
1 parent b229ece9
Exists in master and in 28 other branches canvas_reeng, canvas_text, casmoothing_cython, command-line, debian_cython, ff_mask, ff_mask_improv, ffill_gui, ffill_segmentation, fill_holes_auto, get_pixel, import_mesh, manual_v3.1, measure_canvas, measure_improvements, measure_placement_test, phoenix, region_growing_confidence, remove_local_wxpython, rmatsuda-fix_ref_MTC, rmatsuda-fix_remove_marker_bug, rmatsuda-trigger_bug_fix, segmentation_menu, select_part, smoothing_bin, smoothing_bin_pll, user_guide_en, xmartlabs-command-line

Update README.md 

Split readme
Showing 1 changed file with 3 additions and 65 deletions   Show diff stats
README.md
  Diff comments   View file @ea7731a
... ... @@ -16,68 +16,6 @@ InVesalius generates 3D medical imaging reconstructions based on a sequence of 2
16 16  
17 17 ### Development
18 18  
19   -#### Linux 64 bits (tested on Ubuntu 16.04)
20   -
21   -1) Install the dependencies: `sudo apt-get install python-wxgtk3.0 python-numpy python-scipy python-pil python-matplotlib python-skimage python-nibabel python-serial python-psutil python-vtk6 python-vtkgdcm python-gdcm python-casmoothing cython`
22   -
23   -2) Enter on invesalius3 folder and execute: `python setup.py build_ext --inplace`
24   -
25   -#### Windows 64 bits (tested on Windows 7)
26   -
27   -1) **Python 2.7.8** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/python-2.7.8.amd64.msi
28   -
29   -* Create a system variable named `%PYTHONPATH%` with values: `C:\Python27;C:\Python27\Lib;C:\Python27\Lib\site-packages;C:\Python27\Scripts;`
30   -* Insert into `Path` varibale the value `%PYTHONPATH%`
31   -
32   -2) **wxPython 3.0.2** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/wxPython3.0-win64-3.0.2.0-py27.exe
33   -
34   -3) **PIP** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/get-pip.py
35   -* Download the script and execute `python get-pip.py`
36   -
37   -4) **Numpy 1.11.0** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/numpy-1.11.0+mkl-cp27-cp27m-win_amd64.whl
38   -* Download and execute `pip install numpy-1.11.0+mkl-cp27-cp27m-win_amd64.whl`
39   -
40   -5) **Scipy 0.17.1** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/scipy-0.17.1-cp27-cp27m-win_amd64.whl
41   -* Download and execute `pip install scipy-0.17.1-cp27-cp27m-win_amd64.whl`
42   -
43   -6) **Pillow (new Python Image Library)** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/Pillow-3.2.0-cp27-cp27m-win_amd64.whl
44   -* Download and execute `pip install Pillow-3.2.0-cp27-cp27m-win_amd64.whl`
45   -
46   -7) **Matplotlib 1.5.1** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/matplotlib-1.5.1-cp27-none-win_amd64.whl
47   -* Download and execute `pip install matplotlib-1.5.1-cp27-none-win_amd64.whl`
48   -
49   -8) **Scikit Image 0.12.3** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/scikit_image-0.12.3-cp27-cp27m-win_amd64.whl
50   -* Download and execute `pip install scikit_image-0.12.3-cp27-cp27m-win_amd64.whl`
51   -
52   -9) **Nibabel 2.0.2** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/nibabel-2.0.2-py2.py3-none-any.whl
53   -* Download and execute `pip install nibabel-2.0.2-py2.py3-none-any.whl`
54   -
55   -10) **PySerial 3.0.1** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/pyserial-3.0.1-py2.py3-none-any.whl
56   -* Download and execute `pip install pyserial-3.0.1-py2.py3-none-any.whl`
57   -
58   -11) **PSUtil 4.2.0** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/psutil-4.2.0-cp27-cp27m-win_amd64.whl
59   -* Download and execute `pip install psutil-4.2.0-cp27-cp27m-win_amd64.whl`
60   -
61   -12) **VTK 6.3.0** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/vtk.zip
62   -* Download and unzip on `C:\Python27\Lib\site-packages` and add on `%PYTHONPATH%` variable the value `C:\Python27\Lib\site-packages\vtk\vtk;`
63   -
64   -13) **GDCM (trunk)** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/gdcm.zip
65   -* Download and unzip on `C:\Python27\Lib\site-packages` and add on `%PYTHONPATH%` variable the value `C:\Python27\Lib\site-packages\gdcm;`
66   -
67   -14) **CA Smoothing** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/python_ca_smoothing.zip
68   -* Download and unzip the two files on `C:\Python27\Lib\site-packages`
69   -
70   -15) **Visual C++ 2015 Runtime** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/vcredist_x64.exe
71   -* Download and install
72   -
73   -16) **Cython**
74   -* Execute `pip install cython`
75   -
76   -17) **Compiled InVesalius parts**
77   -
78   -* Option 1: Install [Microsoft Visual Studio Community 2015](https://www.visualstudio.com/pt-br/downloads/download-visual-studio-vs.aspx) and execute `python setup.py build_ext --inplace` on invesalius3 folder.
79   -
80   -* Option 2: Download pre-compiled parts and unzip on `invesalius3/invesalius/data` - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/invesalius-compiled_parts.zip
81   -
82   -
83   -Special thank's to Christoph Gohlke, Laboratory for Fluorescence Dynamics, University of California, Irvine for providing the pre-compiled of various [python packages for Windows 64 bits](http://www.lfd.uci.edu/~gohlke/pythonlibs/)
  19 +* [Running InVesalius 3 in Linux](https://github.com/invesalius/invesalius3/wiki/Running-InVesalius-3-in-Linux)
  20 +* [Running InVesalius 3 in Mac](https://github.com/invesalius/invesalius3/wiki/Running-InVesalius-3-in-Mac)
  21 +* [Running InVesalius 3 in Windows](https://github.com/invesalius/invesalius3/wiki/Running-InVesalius-3-in-Windows)
... ...