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Commit ea7731aca9d1920690effca7c3d4cf5495348f56

Authored by Thiago Franco de Moraes
1 parent b229ece9
Exists in master and in 28 other branches canvas_reeng, canvas_text, casmoothing_cython, command-line, debian_cython, ff_mask, ff_mask_improv, ffill_gui, ffill_segmentation, fill_holes_auto, get_pixel, import_mesh, manual_v3.1, measure_canvas, measure_improvements, measure_placement_test, phoenix, region_growing_confidence, remove_local_wxpython, rmatsuda-fix_ref_MTC, rmatsuda-fix_remove_marker_bug, rmatsuda-trigger_bug_fix, segmentation_menu, select_part, smoothing_bin, smoothing_bin_pll, user_guide_en, xmartlabs-command-line

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@@ -16,68 +16,6 @@ InVesalius generates 3D medical imaging reconstructions based on a sequence of 2 @@ -16,68 +16,6 @@ InVesalius generates 3D medical imaging reconstructions based on a sequence of 2
16 16
17 ### Development 17 ### Development
18 18
19 -#### Linux 64 bits (tested on Ubuntu 16.04)  
20 -  
21 -1) Install the dependencies: `sudo apt-get install python-wxgtk3.0 python-numpy python-scipy python-pil python-matplotlib python-skimage python-nibabel python-serial python-psutil python-vtk6 python-vtkgdcm python-gdcm python-casmoothing cython`  
22 -  
23 -2) Enter on invesalius3 folder and execute: `python setup.py build_ext --inplace`  
24 -  
25 -#### Windows 64 bits (tested on Windows 7)  
26 -  
27 -1) **Python 2.7.8** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/python-2.7.8.amd64.msi  
28 -  
29 -* Create a system variable named `%PYTHONPATH%` with values: `C:\Python27;C:\Python27\Lib;C:\Python27\Lib\site-packages;C:\Python27\Scripts;`  
30 -* Insert into `Path` varibale the value `%PYTHONPATH%`  
31 -  
32 -2) **wxPython 3.0.2** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/wxPython3.0-win64-3.0.2.0-py27.exe  
33 -  
34 -3) **PIP** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/get-pip.py  
35 -* Download the script and execute `python get-pip.py`  
36 -  
37 -4) **Numpy 1.11.0** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/numpy-1.11.0+mkl-cp27-cp27m-win_amd64.whl  
38 -* Download and execute `pip install numpy-1.11.0+mkl-cp27-cp27m-win_amd64.whl`  
39 -  
40 -5) **Scipy 0.17.1** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/scipy-0.17.1-cp27-cp27m-win_amd64.whl  
41 -* Download and execute `pip install scipy-0.17.1-cp27-cp27m-win_amd64.whl`  
42 -  
43 -6) **Pillow (new Python Image Library)** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/Pillow-3.2.0-cp27-cp27m-win_amd64.whl  
44 -* Download and execute `pip install Pillow-3.2.0-cp27-cp27m-win_amd64.whl`  
45 -  
46 -7) **Matplotlib 1.5.1** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/matplotlib-1.5.1-cp27-none-win_amd64.whl  
47 -* Download and execute `pip install matplotlib-1.5.1-cp27-none-win_amd64.whl`  
48 -  
49 -8) **Scikit Image 0.12.3** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/scikit_image-0.12.3-cp27-cp27m-win_amd64.whl  
50 -* Download and execute `pip install scikit_image-0.12.3-cp27-cp27m-win_amd64.whl`  
51 -  
52 -9) **Nibabel 2.0.2** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/nibabel-2.0.2-py2.py3-none-any.whl  
53 -* Download and execute `pip install nibabel-2.0.2-py2.py3-none-any.whl`  
54 -  
55 -10) **PySerial 3.0.1** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/pyserial-3.0.1-py2.py3-none-any.whl  
56 -* Download and execute `pip install pyserial-3.0.1-py2.py3-none-any.whl`  
57 -  
58 -11) **PSUtil 4.2.0** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/psutil-4.2.0-cp27-cp27m-win_amd64.whl  
59 -* Download and execute `pip install psutil-4.2.0-cp27-cp27m-win_amd64.whl`  
60 -  
61 -12) **VTK 6.3.0** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/vtk.zip  
62 -* Download and unzip on `C:\Python27\Lib\site-packages` and add on `%PYTHONPATH%` variable the value `C:\Python27\Lib\site-packages\vtk\vtk;`  
63 -  
64 -13) **GDCM (trunk)** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/gdcm.zip  
65 -* Download and unzip on `C:\Python27\Lib\site-packages` and add on `%PYTHONPATH%` variable the value `C:\Python27\Lib\site-packages\gdcm;`  
66 -  
67 -14) **CA Smoothing** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/python_ca_smoothing.zip  
68 -* Download and unzip the two files on `C:\Python27\Lib\site-packages`  
69 -  
70 -15) **Visual C++ 2015 Runtime** - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/vcredist_x64.exe  
71 -* Download and install  
72 -  
73 -16) **Cython**  
74 -* Execute `pip install cython`  
75 -  
76 -17) **Compiled InVesalius parts**  
77 -  
78 -* Option 1: Install [Microsoft Visual Studio Community 2015](https://www.visualstudio.com/pt-br/downloads/download-visual-studio-vs.aspx) and execute `python setup.py build_ext --inplace` on invesalius3 folder.  
79 -  
80 -* Option 2: Download pre-compiled parts and unzip on `invesalius3/invesalius/data` - ftp://ftp.cti.gov.br/pub/dt3d/invesalius/files/dev/win64/invesalius-compiled_parts.zip  
81 -  
82 -  
83 -Special thank's to Christoph Gohlke, Laboratory for Fluorescence Dynamics, University of California, Irvine for providing the pre-compiled of various [python packages for Windows 64 bits](http://www.lfd.uci.edu/~gohlke/pythonlibs/) 19 +* [Running InVesalius 3 in Linux](https://github.com/invesalius/invesalius3/wiki/Running-InVesalius-3-in-Linux)
  20 +* [Running InVesalius 3 in Mac](https://github.com/invesalius/invesalius3/wiki/Running-InVesalius-3-in-Mac)
  21 +* [Running InVesalius 3 in Windows](https://github.com/invesalius/invesalius3/wiki/Running-InVesalius-3-in-Windows)